View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5574B-LTR4-TNT-insertion-7 (Length: 709)

Name: SO5574B-LTR4-TNT-insertion-7
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5574B-LTR4-TNT-insertion-7
SO5574B-LTR4-TNT-insertion-7
[»] chr3 (7 HSPs)
chr3 (9-601)||(26536172-26536765)
chr3 (225-371)||(26104446-26104592)
chr3 (272-376)||(29019902-29020005)
chr3 (230-376)||(52032804-52032954)
chr3 (666-709)||(26536830-26536873)
chr3 (309-363)||(53461648-53461702)
chr3 (223-267)||(53461733-53461777)
[»] chr1 (10 HSPs)
chr1 (225-371)||(46149937-46150083)
chr1 (225-376)||(3167371-3167522)
chr1 (225-376)||(4941682-4941833)
chr1 (225-372)||(13269270-13269417)
chr1 (225-376)||(21485885-21486036)
chr1 (225-376)||(40777962-40778113)
chr1 (223-376)||(45885888-45886042)
chr1 (228-371)||(8221669-8221810)
chr1 (287-376)||(34771275-34771364)
chr1 (226-278)||(24646945-24646997)
[»] chr8 (9 HSPs)
chr8 (225-376)||(1214252-1214403)
chr8 (225-371)||(17844904-17845050)
chr8 (246-373)||(17856810-17856937)
chr8 (226-376)||(13241122-13241271)
chr8 (223-376)||(28430010-28430163)
chr8 (225-376)||(5725815-5725968)
chr8 (223-316)||(12722382-12722475)
chr8 (306-371)||(25382264-25382329)
chr8 (307-376)||(42573197-42573266)
[»] chr2 (11 HSPs)
chr2 (223-367)||(11033109-11033253)
chr2 (223-376)||(20506598-20506750)
chr2 (225-376)||(37605879-37606030)
chr2 (225-361)||(8267388-8267524)
chr2 (225-376)||(36076369-36076520)
chr2 (223-373)||(13536883-13537030)
chr2 (225-376)||(36520881-36521030)
chr2 (225-376)||(39303426-39303577)
chr2 (225-370)||(20511759-20511904)
chr2 (225-316)||(21136380-21136470)
chr2 (342-371)||(42074781-42074810)
[»] chr7 (5 HSPs)
chr7 (225-376)||(7738788-7738939)
chr7 (233-376)||(24504365-24504507)
chr7 (225-376)||(2746691-2746842)
chr7 (223-376)||(35759122-35759278)
chr7 (319-373)||(19127081-19127135)
[»] chr4 (8 HSPs)
chr4 (225-372)||(36193317-36193464)
chr4 (225-373)||(30563608-30563756)
chr4 (288-376)||(9363237-9363325)
chr4 (225-369)||(27572522-27572666)
chr4 (225-371)||(22851215-22851361)
chr4 (284-371)||(25505296-25505383)
chr4 (282-360)||(12885646-12885724)
chr4 (223-290)||(25505203-25505270)
[»] chr6 (5 HSPs)
chr6 (241-373)||(33105976-33106107)
chr6 (225-357)||(2603791-2603923)
chr6 (225-376)||(3860913-3861063)
chr6 (225-376)||(24209202-24209353)
chr6 (288-372)||(24585208-24585293)
[»] chr5 (3 HSPs)
chr5 (241-373)||(37941227-37941359)
chr5 (286-376)||(28440829-28440919)
chr5 (225-367)||(41732252-41732394)
[»] scaffold0069 (1 HSPs)
scaffold0069 (307-363)||(2298-2354)
[»] scaffold0443 (1 HSPs)
scaffold0443 (225-304)||(7554-7633)


Alignment Details
Target: chr3 (Bit Score: 506; Significance: 0; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 506; E-Value: 0
Query Start/End: Original strand, 9 - 601
Target Start/End: Original strand, 26536172 - 26536765
Alignment:
Q  9 gatgatgcattccaattcctattgaccgtttcaatgacaactcatgactactcttgaatgtgctacttaattaaatttggaacttggtatcattgaacta 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26536172 gatgatgcattccaattcctattgaccgtttcaatgacaactcatgactactcttgaatgtgctacttaattaaatttggaacttggtatcattgaacta 26536271  T
Q  109 gatgataaatcaattattgatgctattcatacaagcatgcaaggccgggttaagagtcaagcaactcaaacaagggctttagatcttaaaattttaggtg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26536272 gatgataaatcaattattgatgctattcatacaagcatgcaaggccgggttaagagtcaagcaactcaaacaagggctttagatcttaaaattttaggtg 26536371  T
Q  209 cnnnnnnnnnn-gtatttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatac 307  Q
    |           |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||    
T  26536372 caaaaaaaaaaagtatttaaaaaattaatttggttataagtatattatcttacagataaactatagacattcgtatagcttaactgattatcaaaaatac 26536471  T
Q  308 ctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgttnnnnnnntatttttaaaggccaatatatcat 407  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||    
T  26536472 ctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgttaaaaaaatatttttaaaggccaatatatcat 26536571  T
Q  408 gttaannnnnnngttttaggcctcttaatatgttaaatctgcccaacaagcatggtttataccatctcatcatggtttataccatctcataatatgacta 507  Q
    |||||       ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26536572 gttaatttttttgttttaggcctcttaatatgttagatctgcccaacaagcatggtttataccatctcatcatggtttataccatctcataatatgacta 26536671  T
Q  508 gccattcatcctgaatgggattgtcttcttcaagtcaaaccaaattacttaggtatgttaatgtaacaatccattctattgctaaagtgactcc 601  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  26536672 gccattcatcctgaatgggattgtcttcttcaagtcaaaccaaattacttaggtatgttaatgtaacaatccattctattgctaaagtgactcc 26536765  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 26104592 - 26104446
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||| ||||||| |||||||| | ||||||||| || |||| || | ||||||||| ||| ||| ||||| || ||||||||| ||||||    
T  26104592 taaaaaattaatttagttataattatattatatgacaaataaattagagacgtttgcatagcttaattgaatataaaaaagacatcaattactcttggtc 26104493  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    || ||||||| ||||  |||||||| |||||||||||||||| ||||    
T  26104492 atgaattcaaattttaatctccacacaattgattttatataactatt 26104446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 272 - 376
Target Start/End: Original strand, 29019902 - 29020005
Alignment:
Q  272 agacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    ||||||| ||||| | ||||||||||  ||||| |||||||||||| |||||||| ||||||| ||| ||||||| ||||||||||||||||||||||||    
T  29019902 agacatttgtataacataactgattactaaaaa-acctcaattactcttggtcatgaattcaaatttcggtctcctcaaaattgattttatataaatatt 29020000  T
Q  372 ctgtt 376  Q
    |||||    
T  29020001 ctgtt 29020005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 230 - 376
Target Start/End: Complemental strand, 52032954 - 52032804
Alignment:
Q  230 aattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcataaa 329  Q
    ||||||||| |||||||||||||||| | ||| ||||| |||||||||| | ||||||||| | |||| ||||||   ||||||| || |||||||| ||    
T  52032954 aattaattttgttataagtatattatatgacatataaattatagacatttgcatagcttaaattattaccaaaaaagtctcaattgctcttggtcatgaa 52032855  T
Q  330 ttcaagttt---tggtctccacaaaattga-ttttatataaatattctgtt 376  Q
    ||||| |||   |||||||||||||||||| |||||| |||||||| ||||    
T  52032854 ttcaaattttggtggtctccacaaaattgatttttatttaaatattttgtt 52032804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 666 - 709
Target Start/End: Original strand, 26536830 - 26536873
Alignment:
Q  666 attaggtacacatgctgcagaagctattaaaaccagtccacaac 709  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  26536830 attaggtacacatgctgcagaagctattaaaaccagtccacaac 26536873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 309 - 363
Target Start/End: Complemental strand, 53461702 - 53461648
Alignment:
Q  309 tcaattacttttggtcataaattcaagttttggtctccacaaaattgattttata 363  Q
    ||||||| | |||||||||||||||| ||||||| ||||||||||||||||||||    
T  53461702 tcaattattcttggtcataaattcaaattttggtatccacaaaattgattttata 53461648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 223 - 267
Target Start/End: Complemental strand, 53461777 - 53461733
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaa 267  Q
    |||||||||| ||||||||||||| |||||||| | |||||||||    
T  53461777 tttaaaaaataaatttggttataaatatattatatgacaaataaa 53461733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 91; Significance: 1e-43; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 91; E-Value: 1e-43
Query Start/End: Original strand, 225 - 371
Target Start/End: Original strand, 46149937 - 46150083
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||||||||||| |||||||| | ||||||||| ||  |||||| | ||| |||||||||||| |||||| |||||||||||||||||||    
T  46149937 taaaaaattaatttggttataaatatattatataacaaataaattactgacatttgcataacttaactgattaccaaaaagacctcaattacttttggtc 46150036  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    || ||||||| ||||||||||||||||||||||||| ||||||||||    
T  46150037 atgaattcaaattttggtctccacaaaattgattttctataaatatt 46150083  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 3167371 - 3167522
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||||||||||||||||||||   ||| ||||| |||| | ||| | |||||||||||||||| ||||||  | ||||||||| || |||    
T  3167371 taaaaaattaatttggttataagtatattataagacagataaattatatatatttgcatagcttaactgattaccaaaaaggcatcaattactcttagtc 3167470  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  3167471 atgaattcaaattttggtctccacaaaattgattttatataaatattttgtt 3167522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 76; E-Value: 9e-35
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 4941682 - 4941833
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||||| |||| |||||||| | ||||||||| |||||| ||| | ||||||||||||||||  |||||| | ||||||| | ||||||    
T  4941682 taaaaaattaatttggtcataattatattatatgacaaataaattatagatatttgaatagcttaactgattacaaaaaatgcatcaattattcttggtc 4941781  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| |||| ||||||||| |||||||||||||||| |||||||||    
T  4941782 atgaattcaaattttagtctccacacaattgattttatataactattctgtt 4941833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 225 - 372
Target Start/End: Complemental strand, 13269417 - 13269270
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||||||| |||||||||||| | ||| ||||| || | | ||| ||||| |||||||||||| ||||||| |||| |||||| || |||    
T  13269417 taaaaaattaatttggttgtaagtatattatatgacagataaattacatatatttgtatatcttaactgattaccaaaaatgcctctattactcttcgtc 13269318  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattc 372  Q
    || ||||||| |||| ||||||||| ||||||||||||||||||||||    
T  13269317 atgaattcaaatttttgtctccacacaattgattttatataaatattc 13269270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 21486036 - 21485885
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||||||||| | ||||||| | | | ||||| |||||||||| | ||| |||||||||||| | |||||  || ||||    ||| ||    
T  21486036 taaaaaattaatttggttatacggatattatgtgatagataaattatagacatttgcataacttaactgattacctaaaatgtctgaatttgccttgatc 21485937  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || |||||||||||||||||||| ||||||||||||||||||||||||||||    
T  21485936 atgaattcaagttttggtctccataaaattgattttatataaatattctgtt 21485885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 40777962 - 40778113
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||| |||||||||||||||||||||||| | ||| ||||| |||||| |||  ||||| ||||||||||| ||||||   |||||||||  ||| ||    
T  40777962 taaaaatttaatttggttataagtatattatatgacagataaattatagatatttatatagtttaactgattaccaaaaaagtctcaattacacttgatc 40778061  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| ||||||| || |||||||||| |||||||||||||| ||||    
T  40778062 atgaattcaaattttggtatctacaaaattgactttatataaatattttgtt 40778113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 223 - 376
Target Start/End: Original strand, 45885888 - 45886042
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttgg 322  Q
    ||||||||||||||||| |||||| |||||||| | ||||||||| || |   ||| ||||||||||||| ||||||| ||| ||||||||||||||||     
T  45885888 tttaaaaaattaatttgcttataaatatattatatgacaaataaattacaagtatttgtatagcttaactaattatcagaaagacctcaattacttttga 45885987  T
Q  323 tcataaattcaagttttggtctcca-caaaattgattttatataaatattctgtt 376  Q
      || ||||||| ||||||||||||  |||||||||||||| |||| ||| ||||    
T  45885988 ctatgaattcaaattttggtctccagaaaaattgattttatgtaaacattttgtt 45886042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 228 - 371
Target Start/End: Complemental strand, 8221810 - 8221669
Alignment:
Q  228 aaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcata 327  Q
    |||||||||||||||||||||||||||| | ||| ||||| || ||||||| | | | |||| ||||||| ||||||  | ||||||||| | ||||       
T  8221810 aaaattaatttggttataagtatattatatgacagataaagtacagacatttgcacaacttacctgattaccaaaaaggcatcaattactctcggtc--g 8221713  T
Q  328 aattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    ||||||| |||||||||  |||||||||||||| ||||||||||    
T  8221712 aattcaaattttggtcttaacaaaattgattttgtataaatatt 8221669  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 287 - 376
Target Start/End: Complemental strand, 34771364 - 34771275
Alignment:
Q  287 ttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    ||||||||||| ||||||  |  |||||||| |||||||| ||||||| ||||| | | |||||||||| ||||||||||||||| ||||    
T  34771364 ttaactgattaccaaaaagccaccaattactcttggtcatgaattcaaattttgttatgcacaaaattggttttatataaatattatgtt 34771275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 226 - 278
Target Start/End: Complemental strand, 24646997 - 24646945
Alignment:
Q  226 aaaaaattaatttggttataagtatattatcttacaaataaactatagacatt 278  Q
    |||||||| |||||||||||| ||||| || | ||||||||| ||||||||||    
T  24646997 aaaaaattgatttggttataaatatataatatgacaaataaattatagacatt 24646945  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 88; Significance: 6e-42; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 1214252 - 1214403
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||   ||||||||||||||| | ||||||||| || ||||||| | |||||||||||||||| |||||| | |||||||||| ||||||    
T  1214252 taaaaaattaattaatttataagtatattatatgacaaataaattacagacatttgcatagcttaactgattaccaaaaagatctcaattactcttggtc 1214351  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  1214352 atgaattcaatttttggtctccacaaaattgattttatataaatattatgtt 1214403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 4e-34
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 17845050 - 17844904
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||||||||||||||||||| | ||| ||||| |  ||||||| | |||||||||||||||| |||||| |||||||||||| ||| ||    
T  17845050 taaaaaattaatttggttataagtatattatataacagataaatttaagacatttgcatagcttaactgattaccaaaaagacctcaattactcttgatc 17844951  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    || || | || ||||| |||| |||||||||||||||||||||||||    
T  17844950 atgaaattaaattttgatctctacaaaattgattttatataaatatt 17844904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 246 - 373
Target Start/End: Original strand, 17856810 - 17856937
Alignment:
Q  246 agtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctc 345  Q
    |||||||||| | || |||||| || ||||||| |||||||||||| |||||||||||||  || ||||||| |||||||||||||||| |||||||||     
T  17856810 agtatattatataactaataaattacagacatttgtatagcttaaccgattatcaaaaatgtcttaattactcttggtcataaattcaaattttggtctt 17856909  T
Q  346 cacaaaattgattttatataaatattct 373  Q
    |||| |||||||||||||||||||||||    
T  17856910 cacataattgattttatataaatattct 17856937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 226 - 376
Target Start/End: Complemental strand, 13241271 - 13241122
Alignment:
Q  226 aaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtca 325  Q
    ||||| ||||||||||||| |||||||||| | | | ||||| || ||||||| | |||||||||||||||||||||||   || ||||||| | | |||    
T  13241271 aaaaatttaatttggttatgagtatattatatgatagataaattacagacatttgcatagcttaactgattatcaaaaaggtct-aattactctagatca 13241173  T
Q  326 taaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
      || |||| |||||||||||||||||||||||||||||||||||||||||    
T  13241172 cgaactcaaattttggtctccacaaaattgattttatataaatattctgtt 13241122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 223 - 376
Target Start/End: Complemental strand, 28430163 - 28430010
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttgg 322  Q
    |||||||||||||||||||||||| |||| ||| | | | ||||| |  |||||||   ||| |||||||| ||| ||| ||  ||||||||||| ||||    
T  28430163 tttaaaaaattaatttggttataaatataatatatgatagataaatttaagacatttacataacttaactggttaccaagaaggcctcaattactcttgg 28430064  T
Q  323 tcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    | || |||| || |||||||||||||||||||||||||||||||||||||||||    
T  28430063 taatgaatttaaattttggtctccacaaaattgattttatataaatattctgtt 28430010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 5725968 - 5725815
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||| |||||| |||||||| | | | ||||| |||||||||| | ||| ||||  |||||||||||||| |||||||| || | ||||    
T  5725968 taaaaaattaatttgattataaatatattatatgatagataaattatagacatttgcataacttacttgattatcaaaaatgcctcaatttctctaggtc 5725869  T
Q  325 ataaattcaagttttggtctc--cacaaaattgattttatataaatattctgtt 376  Q
    |  || |||| ||||||||||   ||||||||||||||||||||||||| ||||    
T  5725868 acgaaatcaaattttggtctctatacaaaattgattttatataaatattatgtt 5725815  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 223 - 316
Target Start/End: Original strand, 12722382 - 12722475
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattac 316  Q
    ||||||||||||||||| |||||| |||||||| | | | || || |||||||||| | ||||||||| || |||||||||||| |||||||||    
T  12722382 tttaaaaaattaatttgattataaatatattatatgatagatgaattatagacatttgcatagcttaattggttatcaaaaatatctcaattac 12722475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 306 - 371
Target Start/End: Complemental strand, 25382329 - 25382264
Alignment:
Q  306 acctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    |||||||||||| ||| | || ||||||| |||| |||| ||||||||||||||||||||||||||    
T  25382329 acctcaattactcttgataatgaattcaaattttagtcttcacaaaattgattttatataaatatt 25382264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 307 - 376
Target Start/End: Complemental strand, 42573266 - 42573197
Alignment:
Q  307 cctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    ||||||||||| |||||||| |||| || ||||| |||| | ||||||||||||||| ||||||| ||||    
T  42573266 cctcaattactcttggtcatgaatttaaattttgatctctataaaattgattttatacaaatattttgtt 42573197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 85; Significance: 4e-40; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 85; E-Value: 4e-40
Query Start/End: Original strand, 223 - 367
Target Start/End: Complemental strand, 11033253 - 11033109
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttgg 322  Q
    ||||||||||||||||||||||||||||||||| | | | |||||||| ||||||| | |||| |||| |||||  ||||||||||||||||||| |||     
T  11033253 tttaaaaaattaatttggttataagtatattatatgatagataaactacagacatttgcatagtttaattgatttccaaaaatacctcaattactcttga 11033154  T
Q  323 tcataaattcaagttttggtctccacaaaattgattttatataaa 367  Q
    |||| ||||||| ||||||||||||||||||||||||||||||||    
T  11033153 tcatgaattcaaattttggtctccacaaaattgattttatataaa 11033109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 223 - 376
Target Start/End: Original strand, 20506598 - 20506750
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttgg 322  Q
    ||||||||||||||||||||||||||||||||| | ||| ||||| || ||||||| ||||| ||||||| |||| ||||||   ||| |||||| |||     
T  20506598 tttaaaaaattaatttggttataagtatattatgtgacagataaattacagacatttgtataacttaacttattaccaaaaaagtctctattactcttg- 20506696  T
Q  323 tcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    |||| ||||||| |||||||||||||||||||||||||||||||||||||||||    
T  20506697 tcatgaattcaaattttggtctccacaaaattgattttatataaatattctgtt 20506750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 37606030 - 37605879
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||| ||||||||||| |||| | ||| ||||| || |  |||| | |||||||||||||||| |||||| || ||||||||| || |||    
T  37606030 taaaaaattaatttagttataagtatgttatatgacagataaattacaagcatttgcatagcttaactgattaccaaaaagacttcaattactcttagtc 37605931  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || || |||| |||| ||||||||||||||||||||||||||||||||||||    
T  37605930 atgaactcaaattttagtctccacaaaattgattttatataaatattctgtt 37605879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 225 - 361
Target Start/End: Original strand, 8267388 - 8267524
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||| ||||||||||||||| | | | ||||| |  ||||||| | |||||||||||||||| ||||||| | ||||||||| ||||||    
T  8267388 taaaaaattaatttgattataagtatattatatgagagataaattccagacatttgcatagcttaactgattaccaaaaatgcatcaattactcttggtc 8267487  T
Q  325 ataaattcaagttttggtctccacaaaattgatttta 361  Q
    || ||||||| ||| ||||||||||||||||||||||    
T  8267488 atgaattcaaatttaggtctccacaaaattgatttta 8267524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 36076369 - 36076520
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||| ||||||||||||||| |||| | | | | | |||||||| ||||||| | ||| |||||||||||||||| ||  ||||| ||||| ||||||    
T  36076369 taaaaatttaatttggttataaatatagtgtatgatagataaactacagacatttgcataacttaactgattatcaagaaggcctcagttactcttggtc 36076468  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
     | ||||||| ||||| |||||||| ||||||||||||||||||||| ||||    
T  36076469 ttgaattcaaattttgatctccacacaattgattttatataaatattatgtt 36076520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 223 - 373
Target Start/End: Original strand, 13536883 - 13537030
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttgg 322  Q
    ||||||||||||||||||| ||||||||||||| | ||| ||||| || ||||||| | ||||||||||||   ||||||||    | |||||||  |||    
T  13536883 tttaaaaaattaatttggtcataagtatattatatgacagataaattacagacatttgaatagcttaactg---atcaaaaaggttttaattactcatgg 13536979  T
Q  323 tcataaattcaagttttggtctccacaaaattgattttatataaatattct 373  Q
    |||| ||||||| |||||||||||||  ||||| |||||||||||||||||    
T  13536980 tcatgaattcaaattttggtctccacgcaattgcttttatataaatattct 13537030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 36521030 - 36520881
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||| |||||||| |||||||| | |||| |||| || ||| ||| | ||| ||||||| ||||||||||   |||  |||||| ||| ||    
T  36521030 taaaaaattaattgggttataattatattatatgacaa-taaattacagatatttgcataacttaactaattatcaaaacggcctttattactcttg-tc 36520933  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| |||||||||||||||||||||||||||||||||||| ||||    
T  36520932 atgaattcaaattttggtctccacaaaattgattttatataaatattatgtt 36520881  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 56; E-Value: 8e-23
Query Start/End: Original strand, 225 - 376
Target Start/End: Original strand, 39303426 - 39303577
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||||||||||| |||||||| | ||| ||||| || | ||||| | |||  |||| |||||| |||||||   ||||||||| | ||||    
T  39303426 taaaaaattaatttggttataaatatattatataacagataaattacacacatttgcataaattaattgattaccaaaaatgtatcaattactctaggtc 39303525  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| ||||| ||||||||||||||||||| ||| ||| |||||||    
T  39303526 atcaattcaaattttgatctccacaaaattgattttttatgaatgttctgtt 39303577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 225 - 370
Target Start/End: Original strand, 20511759 - 20511904
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||| ||||||||||||||| |||||||||| ||| | ||| || |||||||   ||| | || ||||||| |||||| ||||||||||||  || ||    
T  20511759 taaaaatttaatttggttataaatatattatctgacagaaaaattacagacattgacataacatatctgattaccaaaaagacctcaattactcctgatc 20511858  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatat 370  Q
    |  ||||||| |||| |||||||||||||| ||| |||||| ||||    
T  20511859 aagaattcaaattttagtctccacaaaattaattatatatatatat 20511904  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 225 - 316
Target Start/End: Complemental strand, 21136470 - 21136380
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattac 316  Q
    ||||||||||||||||||||||| ||||||| | ||| ||||| |||||||||| | || ||||||||||  | ||||||| ||||||||||    
T  21136470 taaaaaattaatttggttataagaatattatatgacagataaattatagacatttgcatggcttaactgacaaccaaaaat-cctcaattac 21136380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 342 - 371
Target Start/End: Original strand, 42074781 - 42074810
Alignment:
Q  342 tctccacaaaattgattttatataaatatt 371  Q
    ||||||||||||||||||||||||||||||    
T  42074781 tctccacaaaattgattttatataaatatt 42074810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 84; Significance: 2e-39; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 84; E-Value: 2e-39
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 7738939 - 7738788
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||| ||||||||||||| |||||||| | ||| ||||| || ||||||| | ||||||||||||||||  ||||| |||||||||||| ||||||    
T  7738939 taaaaaatcaatttggttataaatatattatatgacagataaattacagacatttgcatagcttaactgattacgaaaaagacctcaattactcttggtc 7738840  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| ||||||| |||||||||||||||||||||||||||| ||||    
T  7738839 atgaattcaaattttggtttccacaaaattgattttatataaatattttgtt 7738788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 233 - 376
Target Start/End: Complemental strand, 24504507 - 24504365
Alignment:
Q  233 taatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcataaattc 332  Q
    ||||||||||||||||||||||| | ||||||||  ||||||  || | ||| ||||  |||||| |||||| || ||||||| | ||| |||| |||||    
T  24504507 taatttggttataagtatattatatgacaaataagttatagatgtttgcataacttagttgattaccaaaaaaacatcaattattcttg-tcatgaattc 24504409  T
Q  333 aagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || |||||||||||||||||||||||||||||||||||| ||||    
T  24504408 aaattttggtctccacaaaattgattttatataaatattttgtt 24504365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 2746842 - 2746691
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||| |||||||||||||||| | | | |||||  ||||  ||| | ||| ||||| ||||||||||||||   |||||| || ||| ||    
T  2746842 taaaaaattaattttgttataagtatattatatgatagataaatcataggtatttgcataacttaattgattatcaaaaatgtttcaattgctcttgatc 2746743  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| ||||| ||||  ||||||||| |||||||||||||| ||||    
T  2746742 atgaattcaaattttgttctcagcaaaattgaatttatataaatattttgtt 2746691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 223 - 376
Target Start/End: Complemental strand, 35759278 - 35759122
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatag---acattcgtatagcttaactgattatcaaaaatacctcaattacttt 319  Q
    |||||||||||||||| |||||||||||||||| | | | ||||| |||||   | ||| | ||| |||| ||| |||| |||||   |||||||||| |    
T  35759278 tttaaaaaattaatttagttataagtatattatatgatagataaattatagtagatatttgcatatcttagctgtttatgaaaaaagtctcaattactct 35759179  T
Q  320 tggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    |   ||| ||||||| |||||||||||||  ||||||||||||||||||||||||||    
T  35759178 tcagcatgaattcaaattttggtctccacggaattgattttatataaatattctgtt 35759122  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 319 - 373
Target Start/End: Complemental strand, 19127135 - 19127081
Alignment:
Q  319 ttggtcataaattcaagttttggtctccacaaaattgattttatataaatattct 373  Q
    |||||||||||||||| | |||||||||| |||||||||||||||||||| ||||    
T  19127135 ttggtcataaattcaaatgttggtctccataaaattgattttatataaatcttct 19127081  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 80; Significance: 4e-37; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 80; E-Value: 4e-37
Query Start/End: Original strand, 225 - 372
Target Start/End: Complemental strand, 36193464 - 36193317
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||||||||||||||||||| || ||||| || || ||| ||| | | ||||||||||||||||||||| || ||||||||| ||| ||    
T  36193464 taaaaaattaatttggttataagtatattatattgcaaatgaattacagatatttgcacagcttaactgattatcaaaaagacttcaattactcttgatc 36193365  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattc 372  Q
    || ||||||| ||||| |||||||||||||||||| ||||||||||||    
T  36193364 atgaattcaaattttgatctccacaaaattgatttcatataaatattc 36193317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 225 - 373
Target Start/End: Original strand, 30563608 - 30563756
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||||||||||||||||||| | ||| ||||| | |||||||| ||||||||||||| | || ||||||  | |||||| || ||| ||    
T  30563608 taaaaaattaatttggttataagtatattatatgacagataaattgtagacatttgtatagcttaactaactaccaaaaaggcttcaatttctcttgctc 30563707  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattct 373  Q
    || ||||||  ||||||||||||||||||||||||||||||||||||||    
T  30563708 atgaattcagattttggtctccacaaaattgattttatataaatattct 30563756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 288 - 376
Target Start/End: Complemental strand, 9363325 - 9363237
Alignment:
Q  288 taactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    |||||||||  ||||||  ||||||||||| |||||||| ||||||| ||||| |||||||||||||||||||||||||||||||||||    
T  9363325 taactgattgccaaaaaggcctcaattactcttggtcatgaattcaaattttgatctccacaaaattgattttatataaatattctgtt 9363237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 225 - 369
Target Start/End: Original strand, 27572522 - 27572666
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||||||||||| |||||||| | ||| ||||| |||||| |||   ||| ||||||| |||| ||||||| | ||||||||| ||| ||    
T  27572522 taaaaaattaatttggttataattatattatatgacagataaattatagatattttgataacttaactaattaccaaaaatgcttcaattactcttgttc 27572621  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaata 369  Q
    || ||||||| ||| |||||||  ||||||||| |||||||||||    
T  27572622 atgaattcaaatttcggtctccgaaaaattgatattatataaata 27572666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 371
Target Start/End: Complemental strand, 22851361 - 22851215
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||||||||||||||||| || | | | |||||| | ||||||| | |||| ||||||||||| ||||||  | ||||||||| ||||||    
T  22851361 taaaaaattaatttggttataagtatatcatatgatagataaacaacagacatttgcatagtttaactgattaccaaaaaggcttcaattactcttggtc 22851262  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    || | | ||| |||||||||  |||||||| | ||||||||||||||    
T  22851261 atgattccaaattttggtctttacaaaatttactttatataaatatt 22851215  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 284 - 371
Target Start/End: Original strand, 25505296 - 25505383
Alignment:
Q  284 agcttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatatt 371  Q
    |||||||||||||| | ||||  | ||||||||| |||||||| ||||||| ||||| ||||||||||||||||||||||||||||||    
T  25505296 agcttaactgattacctaaaaagcttcaattactcttggtcatgaattcaaattttgatctccacaaaattgattttatataaatatt 25505383  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 282 - 360
Target Start/End: Original strand, 12885646 - 12885724
Alignment:
Q  282 atagcttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctccacaaaattgatttt 360  Q
    ||||||||| |||||| ||||||  ||||||||||| |||||||   |||||| |||||| ||||||||||||||||||    
T  12885646 atagcttaattgattaccaaaaaggcctcaattactcttggtcaaggattcaaattttggactccacaaaattgatttt 12885724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 223 - 290
Target Start/End: Original strand, 25505203 - 25505270
Alignment:
Q  223 tttaaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaa 290  Q
    ||||||||||||||||||||||| ||||||||| | ||| ||||| || ||||||| | |||||||||    
T  25505203 tttaaaaaattaatttggttataggtatattatatgacagataaattacagacatttgcatagcttaa 25505270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 69; Significance: 1e-30; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 69; E-Value: 1e-30
Query Start/End: Original strand, 241 - 373
Target Start/End: Original strand, 33105976 - 33106107
Alignment:
Q  241 ttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttg 340  Q
    |||||||| |||||| | |||| |||| || ||||||| | |||||||||||||||| ||||||| ||||||||||| | |||||| ||||||| |||||    
T  33105976 ttataagtgtattatatgacaa-taaattacagacatttgcatagcttaactgattaccaaaaatgcctcaattactctaggtcatgaattcaaattttg 33106074  T
Q  341 gtctccacaaaattgattttatataaatattct 373  Q
    ||||||||||||||||||||||||||| |||||    
T  33106075 gtctccacaaaattgattttatataaacattct 33106107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 225 - 357
Target Start/End: Complemental strand, 2603923 - 2603791
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||| |||||||||||||||||||||||||| | ||| ||||| || ||||||| ||||| || || ||||||| ||||| ||||| |||||||||| ||    
T  2603923 taaataattaatttggttataagtatattatataacagataaattacagacatttgtataactcaattgattattaaaaagacctctattacttttgatc 2603824  T
Q  325 ataaattcaagttttggtctccacaaaattgat 357  Q
    || ||||||| ||| ||||||||||||||||||    
T  2603823 atgaattcaaatttcggtctccacaaaattgat 2603791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 3861063 - 3860913
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||||||||||| ||||||| |||||||| | ||| ||||| || ||| |||  ||||| |||||||||||||||||||   ||||||||| | | ||    
T  3861063 taaaaaattaatttagttataattatattatatgacatataaattacagatatttatatagattaactgattatcaaaaatggatcaattactctagatc 3860964  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || |||| || |||||||| |||||||||||||||||||||||| |||||||    
T  3860963 atgaatttaaattttggtc-ccacaaaattgattttatataaatgttctgtt 3860913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 225 - 376
Target Start/End: Complemental strand, 24209353 - 24209202
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    ||||||||||||||||||||||||||||||| | | | ||||| || |  |||| | ||| ||||| ||||||  |||||| | ||||||||| ||||||    
T  24209353 taaaaaattaatttggttataagtatattatatcatagataaattacatgcatttgcataacttaattgattacaaaaaatgcttcaattactattggtc 24209254  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    || ||||||| ||||  |||| ||||||| ||||||||||||||||||||||    
T  24209253 atgaattcaaattttaatctcaacaaaatagattttatataaatattctgtt 24209202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 288 - 372
Target Start/End: Original strand, 24585208 - 24585293
Alignment:
Q  288 taactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctcc-acaaaattgattttatataaatattc 372  Q
    ||||| |||| ||||||| | | || |||| |||||||| ||||||||||||||||||| | |||||| |||||||||||||||||    
T  24585208 taactaattaacaaaaatgctttaactactcttggtcatgaattcaagttttggtctccaaaaaaattaattttatataaatattc 24585293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 65; Significance: 3e-28; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 241 - 373
Target Start/End: Complemental strand, 37941359 - 37941227
Alignment:
Q  241 ttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttg 340  Q
    ||||||||||||||| | | | ||||| |  ||||||| ||||| ||||||| | ||| ||||| |||||||||||| |||||||| ||||||| |||||    
T  37941359 ttataagtatattatatgatagataaattgcagacatttgtataacttaactcactataaaaaagacctcaattactcttggtcatgaattcaaattttg 37941260  T
Q  341 gtctccacaaaattgattttatataaatattct 373  Q
    ||||| |||||||||||||||||||||||||||    
T  37941259 gtctcaacaaaattgattttatataaatattct 37941227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 286 - 376
Target Start/End: Original strand, 28440829 - 28440919
Alignment:
Q  286 cttaactgattatcaaaaatacctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttatataaatattctgtt 376  Q
    |||||||||||| ||||||  | ||||||||| |||||||||||||||| ||||  |||||||||||||||||||||||||||||||||||    
T  28440829 cttaactgattaccaaaaaggcttcaattactcttggtcataaattcaaattttaatctccacaaaattgattttatataaatattctgtt 28440919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 225 - 367
Target Start/End: Complemental strand, 41732394 - 41732252
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaatacctcaattacttttggtc 324  Q
    |||||| ||||| |||||||||||||||||| | | | ||||| || ||||||| | |||   ||||||||||  |||||| ||| ||||||| ||||||    
T  41732394 taaaaatttaatatggttataagtatattatatgatagataaattacagacatttgcataatataactgattactaaaaatgcctaaattactcttggtc 41732295  T
Q  325 ataaattcaagttttggtctccacaaaattgattttatataaa 367  Q
    || ||||||| ||||| |||||| |||||||||||||||||||    
T  41732294 atgaattcaaattttgatctccataaaattgattttatataaa 41732252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0069 (Bit Score: 33; Significance: 0.000000004; HSPs: 1)
Name: scaffold0069
Description:

Target: scaffold0069; HSP #1
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 307 - 363
Target Start/End: Original strand, 2298 - 2354
Alignment:
Q  307 cctcaattacttttggtcataaattcaagttttggtctccacaaaattgattttata 363  Q
    ||||||||||| |||||||| ||||||| ||||| |||| | |||||||||||||||    
T  2298 cctcaattactcttggtcatgaattcaaattttgatctctataaaattgattttata 2354  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0443 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: scaffold0443
Description:

Target: scaffold0443; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 225 - 304
Target Start/End: Complemental strand, 7633 - 7554
Alignment:
Q  225 taaaaaattaatttggttataagtatattatcttacaaataaactatagacattcgtatagcttaactgattatcaaaaa 304  Q
    ||||||||||||||||||| ||| ||||||| | | | ||||| ||||||||||   |||||||||||||| | ||||||    
T  7633 taaaaaattaatttggttagaagcatattatatgatagataaattatagacattttcatagcttaactgataaccaaaaa 7554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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