View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5574B-LTR4-TNT-insertion-8 (Length: 462)
Name: SO5574B-LTR4-TNT-insertion-8
Description: SO5574B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5574B-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr7 (Bit Score: 417; Significance: 0; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 417; E-Value: 0
Query Start/End: Original strand, 9 - 454
Target Start/End: Original strand, 43535047 - 43535492
Alignment:
| Q |
9 |
tggggaccataagaatagatatatcatacaactggttggtaaggaaaagcacactgggacaacagtgtatcacaatctcattacaactgttttggtcctt |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43535047 |
tggggaccataagaatagatatatcatacaactggttggtaaggaaaagcacactgggacaacagtgtatcacaatctcattacaactgttttggtcctt |
43535146 |
T |
|
| Q |
109 |
tcggttgtagcttgtaggaaccactgtgagtcacttgtctactctggaccgttaatcacgggtttgtagttagaggtggttggttggattggacccgact |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43535147 |
tcggttgtagcttgtaggaaccactgtgagtcacttgtttactctggaccgttaatcacgggtttgtagttagaggtggttggttggattggacccgact |
43535246 |
T |
|
| Q |
209 |
aggatacctccatttaactactaaaatggaaacttgtcaactactacatgttattagaaatggggaaaaaagttgaatgttttatccgtatttgttgaag |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43535247 |
aggatacctccatttaactactaaaatggaaacttgtcaactactacatgttattagaaatggggaaaaaagttgaatgttttatccgtatttgttgaag |
43535346 |
T |
|
| Q |
309 |
agtttaatgagtaagttgtgttagtcggttagttagtgcataggnnnnnnnacacatacatttaattgacaatcactgtacttttatatttatcctttaa |
408 |
Q |
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|||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43535347 |
agtttaatgagtaagttgtgttagtcagttagttagtgcataggtttttttacacatacatttaattgacaatcactgtacttttatatttatcctttaa |
43535446 |
T |
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| Q |
409 |
tttaacaacacatcatttaatacatgtataaaataattatacatta |
454 |
Q |
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| T |
43535447 |
tttaacaacacatcatttaatacatgtataaaataattatacatta |
43535492 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.0000000002; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 413 - 451
Target Start/End: Original strand, 26280970 - 26281008
Alignment:
| Q |
413 |
acaacacatcatttaatacatgtataaaataattataca |
451 |
Q |
| |
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| T |
26280970 |
acaacacatcatttaatacatgtgtaaaataattataca |
26281008 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 413 - 451
Target Start/End: Complemental strand, 44189240 - 44189202
Alignment:
| Q |
413 |
acaacacatcatttaatacatgtataaaataattataca |
451 |
Q |
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| T |
44189240 |
acaacacatcgtttaatacacgtataaaataattataca |
44189202 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 415 - 448
Target Start/End: Complemental strand, 15191087 - 15191054
Alignment:
| Q |
415 |
aacacatcatttaatacatgtataaaataattat |
448 |
Q |
| |
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||||||||||| |||||||||||||||||||||| |
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| T |
15191087 |
aacacatcattaaatacatgtataaaataattat |
15191054 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 413 - 453
Target Start/End: Complemental strand, 45994767 - 45994727
Alignment:
| Q |
413 |
acaacacatcatttaatacatgtataaaataattatacatt |
453 |
Q |
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|||||||||| ||| || ||||||||||||||||||||||| |
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| T |
45994767 |
acaacacatcgtttgatgcatgtataaaataattatacatt |
45994727 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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