View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-1 (Length: 269)
Name: SO5590B-LTR4-TNT-insertion-1
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 1617640 - 1617890
Alignment:
| Q |
9 |
ggaagacttttgggagggttagtggtgtgagtagcggtgagtttgacaaaattcatcaacagagatttggatttcagatgaggggattgaatagcctttg |
108 |
Q |
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| T |
1617640 |
ggaagacttttgggagggttagtggtgtgagtagcggtgagtttgacaaaattcatcaacagagatttggatttcagatgaggggattgaatagcctttg |
1617739 |
T |
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| Q |
109 |
tctgagaaagaagtaaagaaaaataaatgatttagttgctctcattgtaatagtggatgatcagataacataagataaacatttacaaccattacctcaa |
208 |
Q |
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| T |
1617740 |
tctgagaaagaagtaaagaaaaataaatgatttagttgctctcattgtaatagtggatgatcagataacataagataaacatttacaaccattacctcaa |
1617839 |
T |
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| Q |
209 |
cgatcgaaaccaaatcgtcgtcgaaatgctatcctgaggtgctgaggaatt |
259 |
Q |
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| T |
1617840 |
cgatcgaaaccaaatcgtcgtcgaaatgctatcctgaggtgctgaggaatt |
1617890 |
T |
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