View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-10 (Length: 721)
Name: SO5590B-LTR4-TNT-insertion-10
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 683; Significance: 0; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 683; E-Value: 0
Query Start/End: Original strand, 9 - 712
Target Start/End: Complemental strand, 29545180 - 29544477
Alignment:
| Q |
9 |
gacgtaggtgtcagcatcgttttccagtccaaacgtgcagtccctgcagtcaattctacttgtatgatttgcatctgtttgtatggaaagtagtgatgaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29545180 |
gacgtaggtgtcagcatcgttttccagtccaaacgtgcagtccctgcagtcaattctacttgtatgatttgcatctgtttgtatggaaagtagtgatgaa |
29545081 |
T |
|
| Q |
109 |
actgagtacacacactggcttttgtttggtttccccatcaacttcattgttatgatctgttttactgaactctaatcacctttgggtagctgatatttgc |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29545080 |
actgagtacacacactggcttttgtttggtttccccatcaacttcattgttatgatctgttttactgaactctaatcacctttgggtagctgatatttgc |
29544981 |
T |
|
| Q |
209 |
tagtattgcgtacatcggttttaattcttttatgtattctctcaaatgttgtctattctggacagattattttatagggaaattgaagtatatatatttt |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29544980 |
tagtattgcgtacatcggttttaattcttttatgtattctctcaaatgttgtctattctggacagattattttatagggaaattgaagtatatatatttt |
29544881 |
T |
|
| Q |
309 |
tggctgtactattttagtattttgtctggttttaaggcattataatttaaaactttataactgagtttggttacaacatgaaattggtgatgaaaattca |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29544880 |
tggctgtactattttagtattttgtctggttttaaggcattataatttaaaactttataactgagtttggttacaacatgaaattggtgatgaaaattca |
29544781 |
T |
|
| Q |
409 |
ggatgggtttctatctattttaagaaagtctttttctaatgacacgtgacggaatttctaatagagaatcatatgataagcaattatatacaaatttgat |
508 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29544780 |
ggatgggtttctatctattttaagaaagtctttttctaatgacacgtgacggaatttctaatagagaatcatatgataagcaattatatacaaatttgat |
29544681 |
T |
|
| Q |
509 |
tttttaaaattagnnnnnnnattaaaagagactaatttctagttaatcctgcaatagagaatctcatgataagaaataatttctagttcatcctgctata |
608 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29544680 |
tttttaaaattagtttttttattaaaagagactaatttctagttaatcctgcaatagagaatctcatgataagaaataatttctagttcatcctgctata |
29544581 |
T |
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| Q |
609 |
aaataaatgcataaacatatatcaatgtgcatatgattgcaagaatgcacgttgatacacacagtaaaaggaaagagagttactaagtacaaagaaccca |
708 |
Q |
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| T |
29544580 |
aaataaatgcataaacatatatcaatgtgcatatgattgcaagaatgcacgttgatacacacagtaaaaggaaagagagttactaagtacaaagaaccca |
29544481 |
T |
|
| Q |
709 |
attg |
712 |
Q |
| |
|
|||| |
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| T |
29544480 |
attg |
29544477 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 615 - 688
Target Start/End: Complemental strand, 29535195 - 29535122
Alignment:
| Q |
615 |
atgcataaacatatatcaatgtgcatatgattgcaagaatgcacgttgatacacacagtaaaaggaaagagagt |
688 |
Q |
| |
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||||| ||||||||||||| || ||||||||| |||||||||||||||||| |||||||| ||||||||||||| |
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| T |
29535195 |
atgcaaaaacatatatcaaggttcatatgattacaagaatgcacgttgataaacacagtagaaggaaagagagt |
29535122 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 580 - 617
Target Start/End: Complemental strand, 29535261 - 29535224
Alignment:
| Q |
580 |
agaaataatttctagttcatcctgctataaaataaatg |
617 |
Q |
| |
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|||| |||||||||||||||||||| |||||||||||| |
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| T |
29535261 |
agaagtaatttctagttcatcctgcaataaaataaatg |
29535224 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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