View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5590B-LTR4-TNT-insertion-11 (Length: 269)

Name: SO5590B-LTR4-TNT-insertion-11
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5590B-LTR4-TNT-insertion-11
SO5590B-LTR4-TNT-insertion-11
[»] chr8 (11 HSPs)
chr8 (9-259)||(17691637-17691887)
chr8 (16-242)||(17800860-17801086)
chr8 (27-244)||(17779891-17780108)
chr8 (27-168)||(17822180-17822321)
chr8 (16-244)||(17717313-17717538)
chr8 (16-242)||(17813294-17813520)
chr8 (9-137)||(17868878-17869006)
chr8 (189-245)||(17789161-17789217)
chr8 (9-137)||(17851855-17851983)
chr8 (9-134)||(17920611-17920736)
chr8 (108-160)||(17789075-17789127)


Alignment Details
Target: chr8 (Bit Score: 226; Significance: 1e-124; HSPs: 11)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 9 - 259
Target Start/End: Original strand, 17691637 - 17691887
Alignment:
Q  9 aaggtattccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691637 aaggtattccatccaactatttggaggttcaatatcctcattgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaatt 17691736  T
Q  109 acttcaatgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgannnnnnngttcttttcatcaatttcttcaaaac 208  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||       ||||||||||||||||||||||||||    
T  17691737 acttcaatgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgatttttttgttcttttcatcaatttcttcaaaac 17691836  T
Q  209 tttcatgacatgtgtataccttaccatctgttgtgaagttgaaggtaatta 259  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  17691837 tttcatgacatgtgtataccttaccatctgttgtgaagttgaaggtaatta 17691887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 102; E-Value: 1e-50
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 17800860 - 17801086
Alignment:
Q  16 tccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaattacttcaa 115  Q
    |||||||| | ||||||||| ||||||||||| | ||||||| |||||||||||||||||||||| | || ||| |||||| ||||||||||||||||||    
T  17800860 tccatccagccatttggagggtcaatatcctcgttgatcttcacatattcaacagtccatttaactgcagaagtcccatcacccttatcaattacttcaa 17800959  T
Q  116 tgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgannnnnnngttcttttcatcaatttcttcaaaactttcatg 215  Q
    |||||||||||||| ||||||| ||||||||||| ||| ||||||||| ||||| |  |        ||| |||||||||||||||||||   | |||||    
T  17800960 tgatgagcttaaagtccttatagtgctcatcaatatctccaccaaagagcttgtaagtgcctttcttgtttttttcatcaatttcttcaaccttctcatg 17801059  T
Q  216 acatgtgtataccttaccatctgttgt 242  Q
    |||||||| ||||||||||||||||||    
T  17801060 acatgtgtgtaccttaccatctgttgt 17801086  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 27 - 244
Target Start/End: Original strand, 17779891 - 17780108
Alignment:
Q  27 atttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaattacttcaatgatgagctta 126  Q
    ||||||||| ||||| ||||||| |||||||||||||||||| |||||||||   | || |||||||||| |||||||||||||||||| ||| ||||||    
T  17779891 atttggagggtcaatgtcctcattgatcttctcatattcaactgtccatttagatgcagcagtgccatcacccttatcaattacttcaaggataagctta 17779990  T
Q  127 aagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgannnnnnngttcttttcatcaatttcttcaaaactttcatgacatgtgtata 226  Q
    |||||||| || ||||||||||| ||| ||||||||| ||||  || ||       ||||| |||||||| |||||||| ||| ||||||||||||| ||    
T  17779991 aagaccttgtagtgctcatcaatatctccaccaaagagcttgaaaatgatttttttgttctgttcatcaacttcttcaagactctcatgacatgtgtgta 17780090  T
Q  227 ccttaccatctgttgtga 244  Q
    |||| |||||||||||||    
T  17780091 ccttgccatctgttgtga 17780108  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 27 - 168
Target Start/End: Original strand, 17822180 - 17822321
Alignment:
Q  27 atttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaattacttcaatgatgagctta 126  Q
    ||||||||| ||||||||||||| ||| ||||||||||||| |||||||||||||| || | | ||| |||| |||||||||||||||| ||||||||||    
T  17822180 atttggaggatcaatatcctcattgattttctcatattcaatagtccatttaacagcagcatttccaccagctttatcaattacttcaaggatgagctta 17822279  T
Q  127 aagaccttatattgctcatcaatttcttcaccaaagatcttg 168  Q
    ||||||||||| || |||||||| ||| ||||||||| ||||    
T  17822280 aagaccttatagtgttcatcaatatctccaccaaagagcttg 17822321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 16 - 244
Target Start/End: Original strand, 17717313 - 17717538
Alignment:
Q  16 tccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaattacttcaa 115  Q
    |||||||| | |||||| || ||||||||||||| |||||||| ||||||||||||||||||  |||    |||||||||| | ||||||||||||| ||    
T  17717313 tccatccagccatttggtgggtcaatatcctcattgatcttctgatattcaacagtccattttgcagctccagtgccatcaccattatcaattacttgaa 17717412  T
Q  116 tgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgannnnnnngttcttttcatcaatttcttcaaaactttcatg 215  Q
    |||| |  |||||||||||||| ||||||||||| ||| |||| |||| ||||  |  ||       ||||| ||||||||   |||| | ||| |||||    
T  17717413 tgatcaaattaaagaccttatagtgctcatcaatgtctccaccgaagagcttgaaagtgatttttttgttctgttcatcaa---cttcgatactctcatg 17717509  T
Q  216 acatgtgtataccttaccatctgttgtga 244  Q
    |||||||| ||||||||||||| ||||||    
T  17717510 acatgtgtgtaccttaccatctattgtga 17717538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 16 - 242
Target Start/End: Original strand, 17813294 - 17813520
Alignment:
Q  16 tccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaattacttcaa 115  Q
    |||||||| | ||| ||||  ||||||||||||| ||||||| ||||||||| |||||||||||  | || | | |  |||   |||||||||| |||||    
T  17813294 tccatccagccattaggagcgtcaatatcctcattgatcttcacatattcaatagtccatttaatggcagcactactgtcacttttatcaattatttcaa 17813393  T
Q  116 tgatgagcttaaagaccttatattgctcatcaatttcttcaccaaagatcttgtgaacgannnnnnngttcttttcatcaatttcttcaaaactttcatg 215  Q
    | ||||| |||||  ||||||| | |||| |||| ||| |||| |||| ||||| |  ||        ||||||||||||| |||||||| ||| |||||    
T  17813394 taatgagtttaaaatccttatagttctcaccaatatctccaccgaagagcttgtaactgagttttttattcttttcatcaacttcttcaacactctcatg 17813493  T
Q  216 acatgtgtataccttaccatctgttgt 242  Q
    |||||||| |||||| |||||||||||    
T  17813494 acatgtgtgtaccttgccatctgttgt 17813520  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 17868878 - 17869006
Alignment:
Q  9 aaggtattccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaatt 108  Q
    |||||| |||||||||| ||||||||  |||||||||||||   |||||||||| |||| | ||||| |||||| || | | ||||||||||| | ||      
T  17868878 aaggtaatccatccaaccatttggagtatcaatatcctcattattcttctcataatcaatactccatctaacagcagaacttccatcagccttgttaagc 17868977  T
Q  109 acttcaatgatgagcttaaagaccttata 137  Q
    ||||| | |||||||||||| ||||||||    
T  17868978 acttctaagatgagcttaaataccttata 17869006  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 189 - 245
Target Start/End: Original strand, 17789161 - 17789217
Alignment:
Q  189 ttcatcaatttcttcaaaactttcatgacatgtgtataccttaccatctgttgtgaa 245  Q
    |||||||| |||||||| ||| ||||||||||||| |||||| ||||||||||||||    
T  17789161 ttcatcaacttcttcaacactctcatgacatgtgtgtaccttgccatctgttgtgaa 17789217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 9 - 137
Target Start/End: Original strand, 17851855 - 17851983
Alignment:
Q  9 aaggtattccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaatt 108  Q
    |||||| |||||||||| ||||||||  |||| || ||||| | |||||||||| |||| ||||||| ||| || || ||| |||| | ||||   |||     
T  17851855 aaggtagtccatccaaccatttggagtatcaacattctcattgttcttctcataatcaatagtccatctaagagcagaagttccattatccttgataatc 17851954  T
Q  109 acttcaatgatgagcttaaagaccttata 137  Q
    ||||| | |||||||||||||||||||||    
T  17851955 acttctaagatgagcttaaagaccttata 17851983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 9 - 134
Target Start/End: Original strand, 17920611 - 17920736
Alignment:
Q  9 aaggtattccatccaactatttggaggttcaatatcctcatcgatcttctcatattcaacagtccatttaacagaagtagtgccatcagccttatcaatt 108  Q
    |||||| |||||||| | ||||||||  ||||  ||||||| | |||||||||| |||| ||||||| |||||| || | | ||||| ||||| | ||      
T  17920611 aaggtagtccatccagccatttggagtctcaacttcctcattgttcttctcataatcaatagtccatctaacagcagaacttccatctgccttgttaagc 17920710  T
Q  109 acttcaatgatgagcttaaagacctt 134  Q
    ||||| | ||||||||||||||||||    
T  17920711 acttctaagatgagcttaaagacctt 17920736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 17789075 - 17789127
Alignment:
Q  108 tacttcaatgatgagcttaaagaccttatattgctcatcaatttcttcaccaa 160  Q
    ||||||||  |||||||||||||||||||| ||||||||||| ||| ||||||    
T  17789075 tacttcaagaatgagcttaaagaccttatagtgctcatcaatatctccaccaa 17789127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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