View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-3 (Length: 238)
Name: SO5590B-LTR4-TNT-insertion-3
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 11 - 228
Target Start/End: Original strand, 42243812 - 42244029
Alignment:
| Q |
11 |
actaggagaataatgtttgaactttgtagttgcgaaactctattcaatatggttacaatcctagtctatatttagtatatttgttcttaatcgttttaca |
110 |
Q |
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| T |
42243812 |
actaggagaataatgtttgaactttgtagttgcgaaactctattcaatatggttacaatcctagtctatatttagtatatttgttcttaatcgttttaca |
42243911 |
T |
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| Q |
111 |
tattgataaacatatgaattcatcttaaataataacttattactagccataagtgttgaatttgatctaacacaccgttcaatctaacataattgttagg |
210 |
Q |
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| T |
42243912 |
tattgataaacatatgaattcatcttaaataataacttattactagccataagtgttgaatttgatctaacacaccgttcaatctaacataattgttagg |
42244011 |
T |
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| Q |
211 |
ttgagattttagaaatta |
228 |
Q |
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| T |
42244012 |
ttgagattttagaaatta |
42244029 |
T |
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Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 120 - 180
Target Start/End: Original strand, 4753663 - 4753723
Alignment:
| Q |
120 |
acatatgaattcatcttaaataataacttattactagccataagtgttgaatttgatctaa |
180 |
Q |
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| T |
4753663 |
acatatgaattgatcttaaatatcaagtgattactagcattaagtgttgaatttgatctaa |
4753723 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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