View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-4 (Length: 382)
Name: SO5590B-LTR4-TNT-insertion-4
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr7 (Bit Score: 304; Significance: 1e-171; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 304; E-Value: 1e-171
Query Start/End: Original strand, 10 - 369
Target Start/End: Complemental strand, 47808029 - 47807670
Alignment:
| Q |
10 |
gctagaatccacaaaaataaatcgcagtcagttataaataagaagctgttgaacaatagtggaaaaatagatagatatgaacaagtaaagagccaagaac |
109 |
Q |
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| T |
47808029 |
gctagaatccacaaaaataaatcgcagtcagttataaataagaagctgttgaacaatagtggaaaaatagatagatatgaacaagtaaagagccaagaat |
47807930 |
T |
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| Q |
110 |
gaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagttcaaattttccgc |
209 |
Q |
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| T |
47807929 |
gaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgcagacagggaaacaaagtagttcaaattttccgc |
47807830 |
T |
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| Q |
210 |
tatatatttaagtnnnnnnnnnnnnnnnncaattcaacgtgtcacgatagtcgccgaatgacaacttaaaacaatgacacggttttactgtcaaactgct |
309 |
Q |
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| T |
47807829 |
tatatatttaagtaaaaataaaataaaaacaattcaacgtgtcacgatagtcgccgaatgacaacttaaaacaatgacacggttttactgtcaaactgct |
47807730 |
T |
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| Q |
310 |
acaagaataagtagtaagaatgttattttggatcacactaattttcactattttaaattg |
369 |
Q |
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| T |
47807729 |
acaagaataagtagtaagaatgttattttggatcacactaattttcactattttcaattg |
47807670 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 78 - 218
Target Start/End: Complemental strand, 47805224 - 47805085
Alignment:
| Q |
78 |
agatagatatgaacaagtaaagagccaagaacgaatacatgttttgttatatcctcgtgaagacttgtagccttctcttgaaaatccacctgccaatgca |
177 |
Q |
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| T |
47805224 |
agatagatattaacatgcatagagtcaagaatgaatacatgtttcgttatatcctcgtgaagacttgtagccttctcttgaagatcctccttccaatgcc |
47805125 |
T |
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| Q |
178 |
gacagggaaacaaagtagttcaaattttccgctatatattt |
218 |
Q |
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| T |
47805124 |
agcagggaaa-aaagaagttaaaatcatccgctatatattt |
47805085 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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