View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-6 (Length: 403)
Name: SO5590B-LTR4-TNT-insertion-6
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-6 |
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Alignment Details
Target: chr3 (Bit Score: 383; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 383; E-Value: 0
Query Start/End: Original strand, 9 - 395
Target Start/End: Original strand, 40678197 - 40678583
Alignment:
| Q |
9 |
tagttagagaaggtgatccagtgaaagagatgctttttatcatcagaggaagtatagacagttctataacagatggtggtagatcaggattcttcaattc |
108 |
Q |
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| T |
40678197 |
tagttagagaaggtgatccagtgaaagagatgctttttatcatcagaggaagtatagacagttctacaacagatggtggtagatcaggattcttcaattc |
40678296 |
T |
|
| Q |
109 |
aatcacactaaaaccaggtgatttttgtggtgaagaattgctaacatgggctttaatgccagcatctagtctaaaccttccatcatctacaagaactgtt |
208 |
Q |
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| T |
40678297 |
aatcacactaaaaccaggtgatttttgtggtgaagaattgctaacatgggctttaatgccagcatctagtctaaaccttccatcatctacaagaactgtt |
40678396 |
T |
|
| Q |
209 |
aagacactaagtgaagtagaagcatttgcacttagagcagaagatctcaaatttgtgtcaagccagtttaagcgtcttcatagcaagaaactgcaacatg |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40678397 |
aagacactaagtgaagtagaagcatttgcacttagagcagaagatctcaaatttgtgtcaagccagtttaagcgtcttcatagcaagaaactgcaacatg |
40678496 |
T |
|
| Q |
309 |
ctttcagatactactctcatcagtggagagcttggggggcatcttttatacaagctgcgtggcggcgtcataggaagagacaattgg |
395 |
Q |
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| T |
40678497 |
ctttcagatactactctcatcagtggagagcttggggggcatcttttatacaagctgcgtggcggcgtcataggaagagacaattgg |
40678583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 95 - 337
Target Start/End: Complemental strand, 13112468 - 13112226
Alignment:
| Q |
95 |
ggattcttcaattcaatcacactaaaaccaggtgatttttgtggtgaagaattgctaacatgggctttaatgccagcatctagtctaaaccttccatcat |
194 |
Q |
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| T |
13112468 |
ggattcttcaattcaatcacactaaggccaggagacttttgtggagaagaattgttaacatgggcattattaccaaactcaactctcaatttaccttcct |
13112369 |
T |
|
| Q |
195 |
ctacaagaactgttaagacactaagtgaagtagaagcatttgcacttagagcagaagatctcaaatttgtgtcaagccagtttaagcgtcttcatagcaa |
294 |
Q |
| |
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|||| | || || || | || | |||||||||||| ||||| || ||| || ||||| ||||||||| | || ||||| ||||||||||| ||||| |
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| T |
13112368 |
ctactcgtaccgtaaaagctcttactgaagtagaagcttttgcgctacaagcggaggatctaaaatttgtggcgagtcagttcaagcgtcttcacagcaa |
13112269 |
T |
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| Q |
295 |
gaaactgcaacatgctttcagatactactctcatcagtggaga |
337 |
Q |
| |
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|||||| || |||||||| ||||| || || ||||| |||||| |
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| T |
13112268 |
gaaacttcagcatgcttttagatattattcacatcaatggaga |
13112226 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 32; Significance: 0.000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 124 - 159
Target Start/End: Complemental strand, 996159 - 996124
Alignment:
| Q |
124 |
aggtgatttttgtggtgaagaattgctaacatgggc |
159 |
Q |
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| T |
996159 |
aggtgatttttgtggtgaagagttgctaacatgggc |
996124 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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