View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-7 (Length: 329)
Name: SO5590B-LTR4-TNT-insertion-7
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr1 (Bit Score: 312; Significance: 1e-176; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 312; E-Value: 1e-176
Query Start/End: Original strand, 8 - 319
Target Start/End: Complemental strand, 35834910 - 35834599
Alignment:
| Q |
8 |
caaagggaagaggaagaaagtgccgaagttgaaggccagcttgaagaatgttgaatcgcattcacttacactttcatttctctcaaaaattcatcaaaaa |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834910 |
caaagggaagaggaagaaagtgccgaagttgaaggccagcttgaagaatgttgaatcgcattcacttacactttcatttctctcaaaaattcatcaaaaa |
35834811 |
T |
|
| Q |
108 |
tggcttctcgctttcaacatttccataaccgtcaccgattcctttttcttctcttcaattcatgaaccaattttctcacacaacccttccaacttagacc |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834810 |
tggcttctcgctttcaacatttccataaccgtcaccgattcctttttcttctcttcaattcatgaaccaattttctcacacaacccttccaacttagacc |
35834711 |
T |
|
| Q |
208 |
tctgccatggtacgtacgtaatttctcttattcttctattagtttggattcaaattcatcatgtcgtgttattctttgtaatgccgccgatcctccacga |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35834710 |
tctgccatggtacgtacgtaatttctcttattcttctattagtttggattcaaattcatcatgtcgtgttattctttgtaatgccgccgatcctccacga |
35834611 |
T |
|
| Q |
308 |
tcaatgtgaatt |
319 |
Q |
| |
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|||||||||||| |
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| T |
35834610 |
tcaatgtgaatt |
35834599 |
T |
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