View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5590B-LTR4-TNT-insertion-8 (Length: 650)
Name: SO5590B-LTR4-TNT-insertion-8
Description: SO5590B-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5590B-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr5 (Bit Score: 608; Significance: 0; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 608; E-Value: 0
Query Start/End: Original strand, 10 - 642
Target Start/End: Complemental strand, 41796730 - 41796098
Alignment:
| Q |
10 |
actactgtgatgtagctattgtgttgtgagttagtcctacccaatttggaagtatcctcaaagatctcacccatattgatgttgctctctgcaaaaggga |
109 |
Q |
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| T |
41796730 |
actactgtgatgtagctattgtgttgtgagttagtcctacccaatttggaagtatcctcaaagatctcacccatattgatgttgctctctgcaaaaggga |
41796631 |
T |
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| Q |
110 |
tatatcaaactaagtccctttcagtgtccaaatgaattgacttcactttagtttagaggatcacttgggattcatattctaaatgatgcatatgtcaagg |
209 |
Q |
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| T |
41796630 |
tatatcaaactaagtccctttcagtgtccaaatgaattgacttcactttagtttagaggatcacttgggattcatattctaaatgatgcatatgtcaagg |
41796531 |
T |
|
| Q |
210 |
cattattggattatcggccatttagatgacaaaatcttgggtctctgtcagaaataaaagtcttcattctttttgttggtaccaattgatctgaccaatt |
309 |
Q |
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| T |
41796530 |
cattattggattatcggccatttagatgacaaaatcttgggtctctgtcagaaataaaagtcttcattctttttgttggtaccaattgatctgaccaatt |
41796431 |
T |
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| Q |
310 |
attttctaccatatctgtctatagttttatacgattctctgtttgagggtaagatttctatatacccccgttggctttgcaaggacatatggtaccactt |
409 |
Q |
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| T |
41796430 |
attttctaccatatctgtctatagttttatacgattctctgtttgagggtaagatttctatatacccccgttggctttgcaaggacatatggtaccactt |
41796331 |
T |
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| Q |
410 |
ccaagttccatcccaattataaacatcatttgacaattttagacactttataaacatgtctataagaagttaagaaccactcgattatttnnnnnnntaa |
509 |
Q |
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| T |
41796330 |
ccaagttccatcccaattataaacatcatttgacaattttagacactttataaacatgtctataagaagttaagaaccactcgattatttaaaaaaataa |
41796231 |
T |
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| Q |
510 |
tagtgtgtcataggctaatcgttgcaggtgcgttcaacttcaagtggtttatgtaattatatatgttacatgctaacaatcagttgttatatgcagaaat |
609 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41796230 |
tagtgtgtcataggctaatcgttgcaggtgcgttcaacttcaagtggtttatgtaattatatatgttacatgctaacaatcagttgttatatgcagaaat |
41796131 |
T |
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| Q |
610 |
aacatagttttaacttttgagacatgctaatta |
642 |
Q |
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| T |
41796130 |
aacatagttttaacttttgagatatgctaatta |
41796098 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 83; E-Value: 5e-39
Query Start/End: Original strand, 52 - 178
Target Start/End: Complemental strand, 41792982 - 41792856
Alignment:
| Q |
52 |
aatttggaagtatcctcaaagatctcacccatattgatgttgctctctgcaaaagggatatatcaaactaagtccctttcagtgtccaaatgaattgact |
151 |
Q |
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||||||||||||||||||||||||||| ||| |||||||||||||||| |||||| |||| ||||||| |||||||||||| | || |||||| |||||| |
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| T |
41792982 |
aatttggaagtatcctcaaagatctcatccacattgatgttgctctctacaaaagtgatagatcaaacaaagtccctttcaatttctaaatgatttgact |
41792883 |
T |
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| Q |
152 |
tcactttagtttagaggatcacttggg |
178 |
Q |
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| T |
41792882 |
tcacttttgtttagaggatcacttggg |
41792856 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 42 - 197
Target Start/End: Complemental strand, 41762723 - 41762568
Alignment:
| Q |
42 |
agtcctacccaatttggaagtatcctcaaagatctcacccatattgatgttgctctctgcaaaagggatatatcaaactaagtccctttcagtgtccaaa |
141 |
Q |
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||||| ||| ||||| |||| ||||| ||||||||| ||| |||||||||||| ||| ||||||||| | |||||||||||||||||||| | || ||| |
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| T |
41762723 |
agtcccaccgaatttaaaagtttcctctaagatctcatccacattgatgttgctatctacaaaagggaaagatcaaactaagtccctttcaatttcaaaa |
41762624 |
T |
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| Q |
142 |
tgaattgacttcactttagtttagaggatcacttgggattcatattctaaatgatg |
197 |
Q |
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| T |
41762623 |
taaattgacttcactttagtttagaggatcacttgggatttttcctctaaatgatg |
41762568 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 33 - 121
Target Start/End: Complemental strand, 41790049 - 41789961
Alignment:
| Q |
33 |
ttgtgagttagtcctacccaatttggaagtatcctcaaagatctcacccatattgatgttgctctctgcaaaagggatatatcaaacta |
121 |
Q |
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|||||||| ||||| || |||||||| |||||||| ||||||||||||| |||||||||||||||| ||||||||| | ||||||||| |
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| T |
41790049 |
ttgtgagtaagtcccacgaaatttggatgtatcctctaagatctcacccacattgatgttgctctctacaaaagggaaagatcaaacta |
41789961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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