View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5643A-LTR4-TNT-insertion-2 (Length: 188)
Name: SO5643A-LTR4-TNT-insertion-2
Description: SO5643A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5643A-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr2 (Bit Score: 149; Significance: 6e-79; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 149; E-Value: 6e-79
Query Start/End: Original strand, 9 - 178
Target Start/End: Complemental strand, 44727925 - 44727756
Alignment:
| Q |
9 |
tatctagctacgtgtgagaaaagataagtttggaaaaaattattggaggcatgacataaaggagaaagtccttcgaatannnnnnngtctattgggtagt |
108 |
Q |
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| T |
44727925 |
tatctagctacgtgtgagaaaagataagtttggaaaaaattattggaggcatgacataaaggagaaagtccttcgaatatttttttgtctattgggtagt |
44727826 |
T |
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| Q |
109 |
cttttcaaaattctttatcatatgttttcatatgttttgcaggaataaaatgagtctttagcaacgatta |
178 |
Q |
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| T |
44727825 |
cttttcaaaattctttatcatatgttttcatatgttttgcaggaataaaatgagtctttagcaacgatta |
44727756 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 55; E-Value: 8e-23
Query Start/End: Original strand, 16 - 82
Target Start/End: Complemental strand, 44726238 - 44726172
Alignment:
| Q |
16 |
ctacgtgtgagaaaagataagtttggaaaaaattattggaggcatgacataaaggagaaagtccttc |
82 |
Q |
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| T |
44726238 |
ctacgtgtgagaaaagatatgtttggaaaaaattattggaggcatgacataaaggtgaaggtccttc |
44726172 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 129
Target Start/End: Complemental strand, 44727120 - 44727032
Alignment:
| Q |
40 |
ggaaaaaattattggaggcatgacataaaggagaaagtccttcgaatannnnnnngtctattgggtagtcttttcaaaattctttatcat |
129 |
Q |
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| T |
44727120 |
ggaaataattattgaaggcatggcataaaggagaaagtccttc-aacacgattttgtctattgagtagtcttttcaaaatattttatcat |
44727032 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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