View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-1 (Length: 294)
Name: SO5819A-LTR4-TNT-insertion-1
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr1 (Bit Score: 251; Significance: 1e-139; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 251; E-Value: 1e-139
Query Start/End: Original strand, 10 - 285
Target Start/End: Original strand, 7020502 - 7020777
Alignment:
| Q |
10 |
cacaaacacagaagtagnnnnnnntccaaaagataaaaaggcacttctgtgtacatggttgcatgataattaataccttagcccgtgaactggatccttc |
109 |
Q |
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| T |
7020502 |
cacaaacacagaagtagaaaaaaatccaaaagataaaaaggcacttctgtgtacatggttgcatgataattaataccttagcccgtgaactggatccttc |
7020601 |
T |
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| Q |
110 |
ttgtgtcttctatatgagacctcccaatcagcactatatatgaaacaaaaaatcatgatgaaccatataaactgaaacaaaaatttcatgataaatcacg |
209 |
Q |
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| T |
7020602 |
ttgtgtcttctatatgagacctcccaatcagcactatatatgaaacaaaaaatcatgatgaatcatataaactgaaacaaaaatttcatgataaatcacg |
7020701 |
T |
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| Q |
210 |
tcacatatgaaacaaaactttatgtgttgtacaatttgtcacatactattatcatcttatttttattagacaattg |
285 |
Q |
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| T |
7020702 |
tcacatatgaaacaaaactttatgtgttgtacaatttgtcacatactattatcatcttatttttattagacaattg |
7020777 |
T |
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