View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-10 (Length: 211)
Name: SO5819A-LTR4-TNT-insertion-10
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-10 |
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Alignment Details
Target: chr5 (Bit Score: 184; Significance: 1e-100; HSPs: 4)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 11 - 202
Target Start/End: Original strand, 31579518 - 31579709
Alignment:
| Q |
11 |
ctaaagatagaacatcagtaactggcatcttccaataaattgaaggcaacatagttccagcaaccttccccaaagatgcaaatatagcaacaatttgcac |
110 |
Q |
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| T |
31579518 |
ctaaagatagaacatcagtaactggcatcttccaataaattgaaggcaacatagttccagcaaccttccccaaagatgcaaatatagcaacaatttgcac |
31579617 |
T |
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| Q |
111 |
tattacaaagctacgagtattaagtacaaaaatattgaaattagcaccattaaaaaggaaatacaatggcaagaaaaccgctgacacaattg |
202 |
Q |
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| T |
31579618 |
tattacaaagctacgagtattaattagaaaaatattgaaattagcaccattaaaaaggaaatacaatggcaagaaaaccgctgacacaattg |
31579709 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 31605144 - 31605315
Alignment:
| Q |
11 |
ctaaagatagaacatcagtaactggcatcttccaataaattgaaggcaacatagttccagcaaccttccccaaagatgcaaatatagcaacaatttgcac |
110 |
Q |
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| T |
31605144 |
ctaaaaatagaacatcattaactggcatcttcgaataaattgaaggcaacatagtaccaccaaccttccccaaatatgcaactacagcaacaacttgtac |
31605243 |
T |
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| Q |
111 |
tattacaaagctacgagtattaagtacaaaaatattgaaattagcaccattaaaaaggaaatacaatggcaa |
182 |
Q |
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| T |
31605244 |
aattgcaaaggtacgagcatcaattacgaaaaatttgaaactagcaccactataaagaaagtacaatggcaa |
31605315 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 72; E-Value: 6e-33
Query Start/End: Original strand, 11 - 182
Target Start/End: Original strand, 31595380 - 31595551
Alignment:
| Q |
11 |
ctaaagatagaacatcagtaactggcatcttccaataaattgaaggcaacatagttccagcaaccttccccaaagatgcaaatatagcaacaatttgcac |
110 |
Q |
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| T |
31595380 |
ctaaagatagaacatcagtaagtggcatcttcaaataaattgaaggcagcatagtaccaccaacctttcccaaaaatgcaaatacagcaataatttgcac |
31595479 |
T |
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| Q |
111 |
tattacaaagctacgagtattaagtacaaaaatattgaaattagcaccattaaaaaggaaatacaatggcaa |
182 |
Q |
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| T |
31595480 |
agttacaaagcaacgagaatcaattaaaaacaatttgaaacttgcaccacaaaaaagaaagtacaatggcaa |
31595551 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 66; E-Value: 2e-29
Query Start/End: Original strand, 11 - 127
Target Start/End: Original strand, 31563981 - 31564100
Alignment:
| Q |
11 |
ctaaagatagaacatcagtaactggcatcttccaataaattgaaggcaa---catagttccagcaaccttccccaaagatgcaaatatagcaacaatttg |
107 |
Q |
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| T |
31563981 |
ctaaagatagaacatcactaactggcatcttccaaaaaattgaaggcaacatcatagttccagcaatcttccccaaagttgcaattatagcaatagcttg |
31564080 |
T |
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| Q |
108 |
cactattacaaagctacgag |
127 |
Q |
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| T |
31564081 |
tactattaaaaagctacgag |
31564100 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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