View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5819A-LTR4-TNT-insertion-12 (Length: 113)

Name: SO5819A-LTR4-TNT-insertion-12
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5819A-LTR4-TNT-insertion-12
SO5819A-LTR4-TNT-insertion-12
[»] chr4 (3 HSPs)
chr4 (12-106)||(37742289-37742383)
chr4 (12-106)||(37749359-37749453)
chr4 (12-106)||(37752335-37752429)


Alignment Details
Target: chr4 (Bit Score: 91; Significance: 1e-44; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 37742289 - 37742383
Alignment:
Q  12 tgattggtgttggagctataaaagaagacatcaaagtaatgctcctagctggtttcgctggtttagtagcgggtgcttgtagcatggcaattggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37742289 tgattggtgttggagctataaaagaagacatcaaagtaatgctcctagctggtttcgctggtttagtagctggtgcttgtagcatggcaattggt 37742383  T

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Target: chr4; HSP #2
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Original strand, 37749359 - 37749453
Alignment:
Q  12 tgattggtgttggagctataaaagaagacatcaaagtaatgctcctagctggtttcgctggtttagtagcgggtgcttgtagcatggcaattggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37749359 tgattggtgttggagctataaaagaagacatcaaagtaatgctcctagctggtttcgctggtttagtagctggtgcttgtagcatggcaattggt 37749453  T

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Target: chr4; HSP #3
Raw Score: 91; E-Value: 1e-44
Query Start/End: Original strand, 12 - 106
Target Start/End: Complemental strand, 37752429 - 37752335
Alignment:
Q  12 tgattggtgttggagctataaaagaagacatcaaagtaatgctcctagctggtttcgctggtttagtagcgggtgcttgtagcatggcaattggt 106  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  37752429 tgattggtgttggagctataaaagaagacatcaaagtaatgctcctagctggtttcgctggtttagtagcaggtgcttgtagcatggcaattggt 37752335  T

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