View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-13 (Length: 257)
Name: SO5819A-LTR4-TNT-insertion-13
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-13 |
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Alignment Details
Target: chr2 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 10 - 248
Target Start/End: Complemental strand, 5385655 - 5385417
Alignment:
| Q |
10 |
atgaagacaaatcataatttatttgtcaaattttatttttatggaagattatggtcattggttacaaattggttagactttgaaactgtcttgtggttat |
109 |
Q |
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| T |
5385655 |
atgaagacaaatcataatttatttgtcaaattttatttttatggaagattatggtcattggttacaaattggttagactttgaaactgtcttgtggttat |
5385556 |
T |
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| Q |
110 |
ctttctcgtacattttggtgatataggtagtttttcgaaacatattcgattggctttgagcattatttggattttgacagttcggataattcggaaagaa |
209 |
Q |
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| T |
5385555 |
ctttctcgtacattttggtgatataggtagtttttcgaaacatattcgattggctttgagcattatttggattttgacagttcggataattcggaaagaa |
5385456 |
T |
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| Q |
210 |
agaaaggggcgaatttttcagcaaaaggatgagcaattg |
248 |
Q |
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| T |
5385455 |
agaaaggggcgaatttttcagcaaaaggatgagcaattg |
5385417 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 23 - 95
Target Start/End: Complemental strand, 20805141 - 20805069
Alignment:
| Q |
23 |
ataatttatttgtcaaattttatttttatggaagattatggtcattggttacaaattggttagactttgaaac |
95 |
Q |
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| T |
20805141 |
ataatttatttttcaaatgtgattcttttggaagattttggtcaatggttgctaattggttaggctttgaaac |
20805069 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 164 - 232
Target Start/End: Complemental strand, 20804990 - 20804922
Alignment:
| Q |
164 |
tttgagcattatttggattttgacagttcggataattcggaaagaaagaaaggggcgaatttttcagca |
232 |
Q |
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| T |
20804990 |
tttgagtattatttggatttcgacagtttggacaatttagaaagaaataaatgtgagaatttttcagca |
20804922 |
T |
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