View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-14 (Length: 385)
Name: SO5819A-LTR4-TNT-insertion-14
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-14 |
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Alignment Details
Target: chr2 (Bit Score: 293; Significance: 1e-164; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 293; E-Value: 1e-164
Query Start/End: Original strand, 9 - 376
Target Start/End: Original strand, 8170848 - 8171215
Alignment:
| Q |
9 |
agataagccagaataatccatacataagccattccaaacagccccctaacaatgaacaacttgtacttgaataagttcaatgttacatattgttctgtat |
108 |
Q |
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| T |
8170848 |
agataagccagaataatccatacataagccattccaaacagccccctaacaatgaacaacttgtacttgaataagttcaatgttacatattgttctgtat |
8170947 |
T |
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| Q |
109 |
gccagatatttcaagtcacaatagaaaaatacatgtttcnnnnnnnnnnntcgacgtatgttgtcttgtatcttgtgcatatctttgnnnnnnnnnnnnn |
208 |
Q |
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| T |
8170948 |
gccagatatttcaagtcacaatagaaaaatacatgtttcaaaaaaaaaaatcgacgtatgttgtcttgtatcttgtgcatatctttggtgtgtgtgtgtg |
8171047 |
T |
|
| Q |
209 |
natgtcggttcgttgtaatcatttaatttttgtacaaaaaacttcagctcagttgtttataacatacataggttgaaaaaatgcttgagttgtaaccata |
308 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8171048 |
tatgtcggttcgttgtaatcatttaatttttgtacaaaaaacttcagctcagttgtttataacatacataggttgaaaaaatgcttgagttgtaaccata |
8171147 |
T |
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| Q |
309 |
atgatgtgaatgaatgactgatgaggctgttcgatattgatgtcctctccttatttccttgccaattg |
376 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8171148 |
atgatgtgaatgaatgactgatgaggctgttcgatattgatgtcctctccttatttccttgccaattg |
8171215 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 11 - 78
Target Start/End: Original strand, 8182475 - 8182542
Alignment:
| Q |
11 |
ataagccagaataatccatacataagccattccaaacagccccctaacaatgaacaacttgtacttga |
78 |
Q |
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| T |
8182475 |
ataagccaaaataatccaaacataaaccattccaaacagccccctaataatgagcaacttgtatttga |
8182542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 9 - 78
Target Start/End: Original strand, 8176898 - 8176967
Alignment:
| Q |
9 |
agataagccagaataatccatacataagccattccaaacagccccctaacaatgaacaacttgtacttga |
78 |
Q |
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||||||| || ||||||||| |||||||||||||||||||||||||| | ||||| ||||||||| |||| |
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| T |
8176898 |
agataaggcaaaataatccaaacataagccattccaaacagcccccttataatgagcaacttgtatttga |
8176967 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 8144237 - 8144306
Alignment:
| Q |
8 |
cagataagccagaataatccatacataagccattccaaacag-ccccctaacaatgaacaacttgtactt |
76 |
Q |
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| T |
8144237 |
cagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgagcaacttgtactt |
8144306 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 8150458 - 8150527
Alignment:
| Q |
8 |
cagataagccagaataatccatacataagccattccaaacag-ccccctaacaatgaacaacttgtactt |
76 |
Q |
| |
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|||| |||||| ||||||||| |||||||| |||||||||| |||||||| ||||| |||||||||||| |
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| T |
8150458 |
cagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgagcaacttgtactt |
8150527 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 8 - 76
Target Start/End: Original strand, 8155082 - 8155151
Alignment:
| Q |
8 |
cagataagccagaataatccatacataagccattccaaacag-ccccctaacaatgaacaacttgtactt |
76 |
Q |
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|||| |||||| ||||||||| |||||||| |||||||||| |||||||| ||||| |||||||||||| |
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| T |
8155082 |
cagacaagccaaaataatccaaacataagcatttccaaacagcccccctaataatgagcaacttgtactt |
8155151 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 8150774 - 8150862
Alignment:
| Q |
246 |
aaaacttcagctcagttgtttataacatacataggttgaaaaaatgcttgagttgtaaccataatgatgtgaatgaatgactgatgagg |
334 |
Q |
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|||||||||||||||||||||||||||||||| | | || ||||||||||||| || ||||| |||| |||||||| ||||||| |
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| T |
8150774 |
aaaacttcagctcagttgtttataacatacattgataaaatgcgtgcttgagttgtatccgtaatgttgtgtatgaatgagagatgagg |
8150862 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 246 - 334
Target Start/End: Original strand, 8155398 - 8155486
Alignment:
| Q |
246 |
aaaacttcagctcagttgtttataacatacataggttgaaaaaatgcttgagttgtaaccataatgatgtgaatgaatgactgatgagg |
334 |
Q |
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|||||||||||||||||||||||||||||||| | | || ||||||||||||| || ||||| |||| |||||||| ||||||| |
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| T |
8155398 |
aaaacttcagctcagttgtttataacatacattgataaaatgcgtgcttgagttgtatccgtaatgttgtgtatgaatgagagatgagg |
8155486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 246 - 276
Target Start/End: Original strand, 8144553 - 8144583
Alignment:
| Q |
246 |
aaaacttcagctcagttgtttataacataca |
276 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
8144553 |
aaaacttcagctcagttgtttataacataca |
8144583 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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