View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-2 (Length: 310)
Name: SO5819A-LTR4-TNT-insertion-2
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr8 (Bit Score: 294; Significance: 1e-165; HSPs: 4)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 300
Target Start/End: Complemental strand, 261178 - 260885
Alignment:
| Q |
7 |
ataatcaacatcataaatataatttggtgaagtaggaactaattaagctagattcagcaacatgacaatcaataggaattcaacaatatatatgataata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
261178 |
ataatcaacatcataaatataatttggtgaagtaggaactaattaagctagattcagcaacatgacaatcaataggaattcaacaatatatatgataata |
261079 |
T |
|
| Q |
107 |
tgatgtcatctcatcatatgatatgttagctatattattgagtatttttctaaggaattgaagacacacccttgaactaaaaataatggtcacaagaaag |
206 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
261078 |
tgatgtcatctcatcatatgatatgttagctatattattgagtatttttctaaggaattgaagacacacccttgaactaaaaataatggtcacaagaaag |
260979 |
T |
|
| Q |
207 |
agaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaaatatgtgtccaaatta |
300 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
260978 |
agaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaaatatgtgtccaaatta |
260885 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 654743 - 655036
Alignment:
| Q |
7 |
ataatcaacatcataaatataatttggtgaagtaggaactaattaagctagattcagcaacatgacaatcaataggaattcaacaatatatatgataata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
654743 |
ataatcaacatcataaatataatttggtgaagtaggaactaattaagctagattcagcaacatgacaatcaataggaattcaacaatatatatgataata |
654842 |
T |
|
| Q |
107 |
tgatgtcatctcatcatatgatatgttagctatattattgagtatttttctaaggaattgaagacacacccttgaactaaaaataatggtcacaagaaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
654843 |
tgatgtcatctcatcatatgatatgttagctatattattgagtatttttctaaggaattgaagacacacccttgaactaaaaataatggtcacaagaaag |
654942 |
T |
|
| Q |
207 |
agaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaaatatgtgtccaaatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
654943 |
agaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaaatatgtgtccaaatta |
655036 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 7 - 300
Target Start/End: Original strand, 840478 - 840771
Alignment:
| Q |
7 |
ataatcaacatcataaatataatttggtgaagtaggaactaattaagctagattcagcaacatgacaatcaataggaattcaacaatatatatgataata |
106 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
840478 |
ataatcaacatcataaatataatttggtgaagtaggaactaattaagctagattcagcaacatgacaatcaataggaattcaacaatatatatgataata |
840577 |
T |
|
| Q |
107 |
tgatgtcatctcatcatatgatatgttagctatattattgagtatttttctaaggaattgaagacacacccttgaactaaaaataatggtcacaagaaag |
206 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
840578 |
tgatgtcatctcatcatatgatatgttagctatattattgagtatttttctaaggaattgaagacacacccttgaactaaaaataatggtcacaagaaag |
840677 |
T |
|
| Q |
207 |
agaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaaatatgtgtccaaatta |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
840678 |
agaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaaatatgtgtccaaatta |
840771 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 218 - 266
Target Start/End: Complemental strand, 17748430 - 17748382
Alignment:
| Q |
218 |
ttgtgatcctttgaaaattttagctccttctcaactttgagaagatgtt |
266 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||| ||||||||||||| |
|
|
| T |
17748430 |
ttgtgaccctttgaaaattttggctacttctcaaccttgagaagatgtt |
17748382 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 55; Significance: 1e-22; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 20662048 - 20662153
Alignment:
| Q |
184 |
taaaaataatggtcacaagaaagagaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaa |
283 |
Q |
| |
|
||||||||||||| | | |||||||| ||||| |||||||||||||||||||||| || |||||||||||||| || |||||||||||||| |||||| |
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| T |
20662048 |
taaaaataatggttagatgaaagagaa-tttgaattgtgatcctttgaaaattttaactgcttctcaactttgaaaatatgttcagatttgattatctaa |
20662146 |
T |
|
| Q |
284 |
aatatgt |
290 |
Q |
| |
|
||||||| |
|
|
| T |
20662147 |
aatatgt |
20662153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 178 - 290
Target Start/End: Complemental strand, 24226835 - 24226725
Alignment:
| Q |
178 |
ttgaactaaaaataatggtcacaagaaagagaggtttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagatgttcagatttgagg |
277 |
Q |
| |
|
||||| |||||||||| ||||||| |||| | || ||| ||| || |||||||||||||| ||| |||||| || ||||||| ||||||| || ||| | |
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|
| T |
24226835 |
ttgaagtaaaaataatagtcacaataaaggg--gtctgaattgagaccctttgaaaattttggctgcttctccaccttgagaatatgttcaaatatgatg |
24226738 |
T |
|
| Q |
278 |
atctaaaatatgt |
290 |
Q |
| |
|
||||||| ||||| |
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|
| T |
24226737 |
atctaaagtatgt |
24226725 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 184 - 290
Target Start/End: Original strand, 15962880 - 15962986
Alignment:
| Q |
184 |
taaaaataatggtcacaagaaagagaggtttgatttgtgatcctttgaaaattttagctccttctcaa-ctttgagaagatgttcagatttgaggatcta |
282 |
Q |
| |
|
||||||||||||||||||| || ||| ||||| |||||| ||||| |||| ||| ||| |||||||| |||||||||||| ||||||| |||||||| |
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|
| T |
15962880 |
taaaaataatggtcacaaggaaatgag-tttgaattgtgaccctttaaaaaatttggctgcttctcaaactttgagaagatattcagatgagaggatctg |
15962978 |
T |
|
| Q |
283 |
aaatatgt |
290 |
Q |
| |
|
|||||||| |
|
|
| T |
15962979 |
aaatatgt |
15962986 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 226 - 284
Target Start/End: Complemental strand, 5487737 - 5487679
Alignment:
| Q |
226 |
ctttgaaaattttagctccttctcaactttgagaagatgttcagatttgaggatctaaa |
284 |
Q |
| |
|
|||| ||| |||| ||| ||||||||||||||||||| |||||||||||| ||||||| |
|
|
| T |
5487737 |
ctttaaaatttttggctacttctcaactttgagaagaggttcagatttgataatctaaa |
5487679 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 184 - 290
Target Start/End: Complemental strand, 20186152 - 20186044
Alignment:
| Q |
184 |
taaaaataatggtcacaagaaagagaggtttgatttgtgatcctttgaaaatttta---gctccttctcaactttgagaagatgttcagatttgaggatc |
280 |
Q |
| |
|
|||| |||||||| | ||||||||| | ||||| || ||||||||||||||||| ||| ||||| ||| |||| ||||||||||||||||| ||| |
|
|
| T |
20186152 |
taaatataatggttagaagaaagag-gatttgacatgcgatcctttgaaaattttgactgctgcttctaaaccttgaaaagatgttcagatttgattatc |
20186054 |
T |
|
| Q |
281 |
taaaatatgt |
290 |
Q |
| |
|
|||||||||| |
|
|
| T |
20186053 |
taaaatatgt |
20186044 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 188 - 263
Target Start/End: Original strand, 18603033 - 18603107
Alignment:
| Q |
188 |
aataatggtcacaagaaagagagg-tttgatttgtgatcctttgaaaattttagctccttctcaactttgagaagat |
263 |
Q |
| |
|
||||||||||||||| || |||| ||||| |||||| ||||| |||||||| ||| |||||||||||||||||||| |
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|
| T |
18603033 |
aataatggtcacaaggaaaggaggatttgaattgtga-ccttt-aaaattttggctgcttctcaactttgagaagat |
18603107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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