View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5819A-LTR4-TNT-insertion-3 (Length: 384)

Name: SO5819A-LTR4-TNT-insertion-3
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5819A-LTR4-TNT-insertion-3
SO5819A-LTR4-TNT-insertion-3
[»] chr1 (10 HSPs)
chr1 (9-374)||(18416171-18416536)
chr1 (9-355)||(52964155-52964503)
chr1 (124-282)||(19935565-19935723)
chr1 (261-357)||(52961303-52961400)
chr1 (16-103)||(19936028-19936115)
chr1 (261-357)||(25713113-25713211)
chr1 (193-235)||(11222024-11222066)
chr1 (37-135)||(35023824-35023922)
chr1 (205-266)||(43819370-43819431)
chr1 (212-266)||(14446566-14446620)
[»] chr4 (12 HSPs)
chr4 (9-366)||(33834822-33835179)
chr4 (13-366)||(37915311-37915669)
chr4 (260-366)||(33831138-33831244)
chr4 (261-367)||(37920542-37920648)
chr4 (9-209)||(23298388-23298585)
chr4 (208-260)||(23297986-23298038)
chr4 (209-266)||(46593585-46593642)
chr4 (209-266)||(50962935-50962992)
chr4 (209-266)||(31838012-31838069)
chr4 (149-266)||(37077141-37077258)
chr4 (209-266)||(37495600-37495657)
chr4 (50-258)||(22502441-22502649)
[»] chr8 (5 HSPs)
chr8 (12-355)||(37000825-37001158)
chr8 (261-335)||(36996983-36997056)
chr8 (209-266)||(43737175-43737232)
chr8 (150-266)||(8475932-8476047)
chr8 (209-266)||(11023495-11023552)
[»] chr7 (6 HSPs)
chr7 (9-357)||(37624884-37625232)
chr7 (50-266)||(45182237-45182453)
chr7 (50-267)||(44263129-44263346)
chr7 (50-114)||(42357230-42357294)
chr7 (222-264)||(7929466-7929508)
chr7 (204-266)||(10890256-10890318)
[»] chr5 (6 HSPs)
chr5 (261-363)||(8081376-8081479)
chr5 (9-290)||(32330932-32331201)
chr5 (35-154)||(4490444-4490562)
chr5 (50-266)||(21556-21772)
chr5 (156-276)||(35702074-35702192)
chr5 (209-266)||(30591680-30591737)
[»] chr2 (7 HSPs)
chr2 (58-266)||(10434455-10434663)
chr2 (100-219)||(703488-703606)
chr2 (50-266)||(38506372-38506588)
chr2 (209-266)||(17727045-17727102)
chr2 (50-114)||(32663221-32663285)
chr2 (205-264)||(38512416-38512475)
chr2 (212-262)||(31324078-31324128)
[»] chr6 (2 HSPs)
chr6 (190-285)||(1217561-1217660)
chr6 (260-357)||(13329015-13329114)
[»] scaffold0411 (1 HSPs)
scaffold0411 (50-266)||(10127-10343)
[»] chr3 (3 HSPs)
chr3 (50-266)||(36500842-36501058)
chr3 (209-266)||(12932411-12932468)
chr3 (209-266)||(15424538-15424595)
[»] scaffold0744 (1 HSPs)
scaffold0744 (209-266)||(6453-6510)
[»] scaffold0071 (1 HSPs)
scaffold0071 (209-266)||(37643-37700)


Alignment Details
Target: chr1 (Bit Score: 366; Significance: 0; HSPs: 10)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 366; E-Value: 0
Query Start/End: Original strand, 9 - 374
Target Start/End: Complemental strand, 18416536 - 18416171
Alignment:
Q  9 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18416536 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 18416437  T
Q  109 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18416436 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 18416337  T
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttgatttagtttcgttttttgc 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18416336 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttgatttagtttcgttttttgc 18416237  T
Q  309 tttcatgagatattctctcttgtatataaacttgcatacatcattgtaaatcattaaaagtcatta 374  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18416236 tttcatgagatattctctcttgtatataaacttgcatacatcattgtaaatcattaaaagtcatta 18416171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 9 - 355
Target Start/End: Original strand, 52964155 - 52964503
Alignment:
Q  9 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 108  Q
    ||||||| ||||||||| | ||| | ||| ||||||||||||||||  |||||||||||||||| ||||| |||||||||||||| |||||||||| |||    
T  52964155 aacttaaatgtgataatcaatcgacgttgcatctttcgtcaaatcccatttttcatgagaggactaaacacatagaagttgattgccactttatcagaga 52964254  T
Q  109 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 208  Q
    |||||| ||||  | ||||||||||||||||||| | |||||||||||||| ||||| |||||||| |||||||| ||||  ||||||||||||||||      
T  52964255 gaagatcctttccgacatcattaaaacctcttcaataagctccaatgatcaactagccgatatcttcaccaaacctctacaaggacctcagattgattga 52964354  T
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggag-tgttgattattctctatttattatagttgatttag-tttcgtttttt 306  Q
    |||||||||||||||||||||||||||||||||| |||| |||||||||| | |||||||||||||||||||||||| |||||||||| |||| | ||||    
T  52964355 atatgtaacaagctggatgcatatgatatatatgctccagcttgagggggggttgttgattattctctatttattatggttgatttagttttcttatttt 52964454  T
Q  307 gctttcatgagatattctctcttgtatataaacttgcatacatcattgt 355  Q
    |||||  ||||| |||||||||||||||||| |||| ||||||||||||    
T  52964455 gctttattgagagattctctcttgtatataagcttgtatacatcattgt 52964503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 124 - 282
Target Start/End: Complemental strand, 19935723 - 19935565
Alignment:
Q  124 catcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctg 223  Q
    ||||||||||||| ||||||||| ||| ||||||||| ||  |||| | ||  | ||| | ||| ||||||||||| || ||||| ||||||||||| |     
T  19935723 catcattaaaaccacttcagtgaactcaaatgatcagttaaatgatgttttctctaaatctctatggggacctcaggtttattatgtatgtaacaagtta 19935624  T
Q  224 gatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttatt 282  Q
    ||||||||||||||||||| |||| ||| | |  |||||||||||||||||||||||||    
T  19935623 gatgcatatgatatatatgctccagcttaaagatgagtgttgattattctctatttatt 19935565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 52961303 - 52961400
Alignment:
Q  261 tgttgattattctctatttattatagttgatttagttt-cgttttttgctttcatgagatattctctcttgtatataaacttgcatacatcattgtaa 357  Q
    ||||||||||||| |||||||||| ||||||||||||| | | |||||||||  ||||| ||| ||||||||| ||||  ||| ||||||||||||||    
T  52961303 tgttgattattctttatttattatggttgatttagtttgcttattttgctttattgagagattttctcttgtacataagtttgtatacatcattgtaa 52961400  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 16 - 103
Target Start/End: Complemental strand, 19936115 - 19936028
Alignment:
Q  16 gtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatc 103  Q
    |||||||||| ||| | |||||||| |||| ||||||    |||||||||||| ||| |||||  |||||||||||||||||||||||    
T  19936115 gtgtgataatcagttgacattgtatttttcttcaaatgtgatttttcatgagatgactaaacacctagaagttgattgtcactttatc 19936028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 261 - 357
Target Start/End: Original strand, 25713113 - 25713211
Alignment:
Q  261 tgttgattattctctatttattatagttgatttagtttcgtttttt--gctttcatgagatattctctcttgtatataaacttgcatacatcattgtaa 357  Q
    |||||||||||||||| |||||||  |||| |||||||| || |||  | |||| ||||| |||||||| |||||||||   |||||||||||||||||    
T  25713113 tgttgattattctctacttattatgcttgacttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcatacatcattgtaa 25713211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 193 - 235
Target Start/End: Complemental strand, 11222066 - 11222024
Alignment:
Q  193 acctcagattgattatatatgtaacaagctggatgcatatgat 235  Q
    |||||||||||||||||||||||||||| ||||||||| ||||    
T  11222066 acctcagattgattatatatgtaacaagttggatgcatgtgat 11222024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 37 - 135
Target Start/End: Complemental strand, 35023922 - 35023824
Alignment:
Q  37 gtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaac 135  Q
    |||||||||||| | |||| | |||||| |||| |||||||||||||||||||| ||  |||| || | ||||||||| || ||||| ||||| |||||    
T  35023922 gtatctttcgtccagtccaatctttcattagagaacaaaacatatagaagttgactggtacttaattagagagaagatcctctttggaatcatcaaaac 35023824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 205 - 266
Target Start/End: Original strand, 43819370 - 43819431
Alignment:
Q  205 ttatatatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    ||||||||||||| |||  ||| |||||||| |||||| ||||||||||| |||||||||||    
T  43819370 ttatatatgtaactagcatgatccatatgatttatatgctccaacttgagagggagtgttga 43819431  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 266
Target Start/End: Original strand, 14446566 - 14446620
Alignment:
Q  212 tgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    ||||||||| |||||| ||| || |||||||||||||||||| |||| |||||||    
T  14446566 tgtaacaagttggatgtataagaaatatatggtccaacttgacggggtgtgttga 14446620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 306; Significance: 1e-172; HSPs: 12)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 306; E-Value: 1e-172
Query Start/End: Original strand, 9 - 366
Target Start/End: Original strand, 33834822 - 33835179
Alignment:
Q  9 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 108  Q
    |||||||||||||||||  |||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||    
T  33834822 aacttaagtgtgataatcggtcggcattgtatctttcatcaaatccagtttttcatgagaggacaaaacacatagaagttgattgtcactttatcagaga 33834921  T
Q  109 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||| ||||||||||    
T  33834922 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagccgatatctttaccaaaccactacgggaacctcggattgattat 33835021  T
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttgatttagtttcgttttttgc 308  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||    
T  33835022 atatgtaacaagctggatgcatatgatatatatggtccagcttgagggggagtgttgattattctttatttattatagttgatttagtttccttttttgc 33835121  T
Q  309 tttcatgagatattctctcttgtatataaacttgcatacatcattgtaaatcattaaa 366  Q
    |||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  33835122 tttcctgagatattctctcttgtatataagcttgcatacatcattgtaaatcattaaa 33835179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 268; E-Value: 1e-149
Query Start/End: Original strand, 13 - 366
Target Start/End: Complemental strand, 37915669 - 37915311
Alignment:
Q  13 taagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaag 112  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||    
T  37915669 taagtgtgataatcagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacacatagaagttgattgtcactttatcagagagaag 37915570  T
Q  113 a---tactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattata 209  Q
    |   |||||| ||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||| |||||||||||||||||||||||||||||    
T  37915569 aagatactttctggcatcattaaaacctcttcagtgagctccaatgatcaactagccgatatctttaccataccactacggggacctcagattgattata 37915470  T
Q  210 tatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttgatttagtttcgttttttgct 309  Q
    |||||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  37915469 tatgtaacaagctggatgcatatgatatatatggtccatcttga-ggggagtgttgattattctctatttattatagttgatttagtttccttttttgct 37915371  T
Q  310 ttcatgagatattctctcttgtat---ataaacttgcatacatcattgtaaatcattaaa 366  Q
    ||| |||||||| ||||| | |||   |||| ||||||||||||||||||||||||||||    
T  37915370 ttcctgagatatactctcatttatataataagcttgcatacatcattgtaaatcattaaa 37915311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 260 - 366
Target Start/End: Original strand, 33831138 - 33831244
Alignment:
Q  260 gtgttgattattctctatttattatagttgatttagtttcgttttttgctttcatgagatattctctcttgtatataaacttgcatacatcattgtaaat 359  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  33831138 gtgttgattattctctatttattatagttgatttagtttccttttttgctttcttgagatattctctcttgtatataagcttgcatacatcattgtaaat 33831237  T
Q  360 cattaaa 366  Q
    |||||||    
T  33831238 cattaaa 33831244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 91; E-Value: 5e-44
Query Start/End: Original strand, 261 - 367
Target Start/End: Complemental strand, 37920648 - 37920542
Alignment:
Q  261 tgttgattattctctatttattatagttgatttagtttcgttttttgctttcatgagatattctctcttgtatataaacttgcatacatcattgtaaatc 360  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||    
T  37920648 tgttgattattctctatttattatagttgatttagtttccttttttgctttcctgagatattctctcttgtatataagcttgcatacatcattgtaaatc 37920549  T
Q  361 attaaaa 367  Q
    | |||||    
T  37920548 actaaaa 37920542  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 9 - 209
Target Start/End: Complemental strand, 23298585 - 23298388
Alignment:
Q  9 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 108  Q
    |||||| |||||| ||| |||  |||||||||| ||| |||||  | || |||||||||||   ||||||| || |  |||||| ||||||||||| |||    
T  23298585 aacttatgtgtgaaaatcagtatgcattgtatcattcttcaaactccgtctttcatgagag---aaaacatgtacatattgattttcactttatcagaga 23298489  T
Q  109 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 208  Q
     || ||  |||  ||||||||||||||||||||| ||||||||||| | ||| | ||  ||||||| |||||| | |||| ||||||||| ||| |||||    
T  23298488 aaatatcatttgaggcatcattaaaacctcttcattgagctccaataaccagttcgccaatatcttcaccaaatctctacagggacctcaaattaattat 23298389  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 208 - 260
Target Start/End: Complemental strand, 23298038 - 23297986
Alignment:
Q  208 tatatgtaacaagctggatgcatatgatatatatggtccaacttgagggggag 260  Q
    ||||||||||||| ||||||||||||||||| ||| |||||||||||||||||    
T  23298038 tatatgtaacaagttggatgcatatgatataaatgctccaacttgagggggag 23297986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 46593642 - 46593585
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| |||||||||||||||| |||| |||| ||||||||||||||||||    
T  46593642 atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga 46593585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 50962935 - 50962992
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| |||||||||||||||| |||| |||| ||||||||||||||||||    
T  50962935 atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga 50962992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 31838069 - 31838012
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||||| |||||||||||| | |||| |||| ||||||||||||||||||    
T  31838069 atatgtgacaagcttgatgcatatgatttgtatgctccagcttgagggggagtgttga 31838012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 149 - 266
Target Start/End: Original strand, 37077141 - 37077258
Alignment:
Q  149 tccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaa 248  Q
    ||||| ||||| || |||||||||||||| |||   |||||| | |||| |||   ||| |||||| ||||| |||||||||||||| |||| |  |||     
T  37077141 tccaaggatcaacttgctgatatctttactaaatttctacggagtcctcggataacttacatatgtgacaagatggatgcatatgatgtatacgcaccac 37077240  T
Q  249 cttgagggggagtgttga 266  Q
    ||||||||||||||||||    
T  37077241 cttgagggggagtgttga 37077258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 37495600 - 37495657
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| |||||||||||||| | |||| |||| ||||||||||||||||||    
T  37495600 atatgtgacaagatggatgcatatgatttgtatgctccaccttgagggggagtgttga 37495657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 258
Target Start/End: Complemental strand, 22502649 - 22502441
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    ||||| |||||||| ||||| ||||| |||||||||||||| ||||| || || |  || ||||| || | |||  |||| |||||||| |  || |  |    
T  22502649 aatccggtttttcacgagagaacaaagcatatagaagttgactgtcatttcattagggaaaagattctctctggagtcatcaaaacctcatttgtcaatt 22502550  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    | || ||||| || || ||||||||||| ||| | |||||  | |||| |||   ||| |||||| ||||| |||||||||||||||| |||| |||| |    
T  22502549 ctaaggatcaacttgcagatatctttactaaatctctacgaagtcctcggataacttacatatgtgacaagatggatgcatatgatatgtatgctccacc 22502450  T
Q  250 ttgaggggg 258  Q
    |||||||||    
T  22502449 ttgaggggg 22502441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 202; Significance: 1e-110; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 12 - 355
Target Start/End: Original strand, 37000825 - 37001158
Alignment:
Q  12 ttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaa 111  Q
    |||||||||||||| ||||||  ||||||||| ||||||||||| |||||||||||||||||||||| |  |||||||||||||  ||||||| ||||||    
T  37000825 ttaagtgtgataatcagtcggagttgtatcttacgtcaaatccaatttttcatgagaggacaaaacaca--gaagttgattgtcgatttatcagagagaa 37000922  T
Q  112 gatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatata 211  Q
    |||| |||  |||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||| ||||||||||||||||||||||| |||    
T  37000923 gataatttccggcatcattaaaacctcttcagtgagctccaatgattagctagccgatatctttaccaaacctctacggggacctcagattgattacata 37001022  T
Q  212 tgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttgatttagtttcgtt-ttttgctt 310  Q
    ||||||||||||||||         |||||| |||| |||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||| ||    
T  37001023 tgtaacaagctggatg---------tatatgctccagcttgagggggagtgttgattattctctatttattatggttgatttagtttccttattttgttt 37001113  T
Q  311 tcatgagatattctctcttgtatataaacttgcatacatcattgt 355  Q
    |||||||| |||||||||||||||||| |||||||||||||||||    
T  37001114 tcatgagagattctctcttgtatataagcttgcatacatcattgt 37001158  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 261 - 335
Target Start/End: Original strand, 36996983 - 36997056
Alignment:
Q  261 tgttgattattctctatttattatagttgatttagtttcgtt-ttttgctttcatgagatattctctcttgtatat 335  Q
    |||||||||||||||||||||||| |||||||||||||| || ||||| |||||||||  |||||||| |||||||    
T  36996983 tgttgattattctctatttattatggttgatttagtttccttattttgttttcatgag--attctctcgtgtatat 36997056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 43737175 - 43737232
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| |||||||||||||||| |||| |||| ||||||||||||||||||    
T  43737175 atatgtgacaagatggatgcatatgatatgtatgctccaccttgagggggagtgttga 43737232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 150 - 266
Target Start/End: Complemental strand, 8476047 - 8475932
Alignment:
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    |||| ||||| || |||||||||||||| ||| | ||||||   |||| || | |||| |||||| ||||| |||||||||||||| ||||||  ||| |    
T  8476047 ccaaggatcaactcgctgatatctttactaaatctctacggattcctc-gaataattacatatgtgacaagatggatgcatatgatgtatatgcaccacc 8475949  T
Q  250 ttgagggggagtgttga 266  Q
    |||||||||||||||||    
T  8475948 ttgagggggagtgttga 8475932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 11023552 - 11023495
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| ||||||||||||||||||||| ||||  ||||| | |||||||||    
T  11023552 atatgtgacaagatggatgcatatgatatatatgttccactttgagtgtgagtgttga 11023495  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 166; Significance: 9e-89; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 166; E-Value: 9e-89
Query Start/End: Original strand, 9 - 357
Target Start/End: Original strand, 37624884 - 37625232
Alignment:
Q  9 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 108  Q
    ||||||| ||||||||| ||||||||||| || |||| ||||||||||||||||||| |||||| ||||| ||||||||||||||||||||||||| | |    
T  37624884 aacttaaatgtgataatcagtcggcattgcat-tttcatcaaatccagtttttcatgggaggactaaacacatagaagttgattgtcactttatcagaaa 37624982  T
Q  109 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 208  Q
    |||| | ||||  | |||||||||||||||||  || ||||||||||||||  || | |||||||| || ||| | |||||||||||| |||||||||||    
T  37624983 gaaggtcctttccgacatcattaaaacctcttttgtaagctccaatgatcacttatccgatatcttcactaaaactctacggggaccttagattgattat 37625082  T
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttgatttagtttcgtt-ttttg 307  Q
    |||||||||||| || |||||||||||||||||| ||| ||||||||| |||||||||||||||||||||||| || |||||||||||||| || |||||    
T  37625083 atatgtaacaagttgaatgcatatgatatatatgctcctacttgagggagagtgttgattattctctatttatcatggttgatttagtttcattattttg 37625182  T
Q  308 ctttcatgagatattctctcttgtatataaacttgcatacatcattgtaa 357  Q
     |||  |||||||||||||| |||||||||  ||| || |||||||||||    
T  37625183 ttttattgagatattctctcgtgtatataagtttgtatgcatcattgtaa 37625232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 266
Target Start/End: Complemental strand, 45182453 - 45182237
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||||||||| | | |||||||||  |    || ||||| | |||||| || || |       
T  45182453 aatccagtttttcacgagaggacaaagcatattgaagttgactgtcactttcttagagagaagattatcaccggaatcatcagaacctcgtctgtcaatg 45182354  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    |||| ||||| || | |||||||||||| ||| | |||||| | ||||||||   ||| |||||| ||||| |||||||||||||| |||| |  ||| |    
T  45182353 ccaaggatcaacttgttgatatctttactaaatctctacggagtcctcagataacttacatatgtgacaagatggatgcatatgatgtatacgcaccacc 45182254  T
Q  250 ttgagggggagtgttga 266  Q
    |||||||||||||||||    
T  45182253 ttgagggggagtgttga 45182237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 50 - 267
Target Start/End: Complemental strand, 44263346 - 44263129
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    ||||| |||||||| ||||| ||| | ||||||||||| || ||||| || || |  || ||||| || |||||  |||| |||||||| |  || |  |    
T  44263346 aatccggtttttcacgagagaacatagcatatagaagtcgactgtcatttcattagggaaaagattctctttggagtcatcaaaacctcatttgtcaatt 44263247  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    | || ||||| || || ||||||||||| ||| | |||||  | ||||||||   ||| |||||| ||||| |||||||||||||||| |||| |||| |    
T  44263246 ctaaggatcaacttgcagatatctttactaaatctctacgaagtcctcagataacttacatatgtgacaagatggatgcatatgatatctatgctccacc 44263147  T
Q  250 ttgagggggagtgttgat 267  Q
    ||||||||||||||||||    
T  44263146 ttgagggggagtgttgat 44263129  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 42357294 - 42357230
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagat 114  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||||||||| | | |||||||||    
T  42357294 aatccagtttttcacgagaggacaaagcatattgaagttgactgtcactttcttagagagaagat 42357230  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 222 - 264
Target Start/End: Original strand, 7929466 - 7929508
Alignment:
Q  222 tggatgcatatgatatatatggtccaacttgagggggagtgtt 264  Q
    |||||||||||||||| |||| |||| ||||||||||||||||    
T  7929466 tggatgcatatgatatgtatgctccaccttgagggggagtgtt 7929508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 204 - 266
Target Start/End: Original strand, 10890256 - 10890318
Alignment:
Q  204 attatatatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    ||||| ||||||||||||| | |||||||||| | |||| |||||||||||||  ||||||||    
T  10890256 attatctatgtaacaagcttggtgcatatgatttctatgctccaacttgagggttagtgttga 10890318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 84; Significance: 8e-40; HSPs: 6)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 84; E-Value: 8e-40
Query Start/End: Original strand, 261 - 363
Target Start/End: Complemental strand, 8081479 - 8081376
Alignment:
Q  261 tgttgattattctct-atttattatagttgatttagtttcgttttttgctttcatgagatattctctcttgtatataaacttgcatacatcattgtaaat 359  Q
    ||||||||||||||| |||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||| |||||||||||||||||||||    
T  8081479 tgttgattattctcttatttattatagttgatttagtttccttttttgctttcctgagatattctctcttgtatataagcttgcatacatcattgtaaat 8081380  T
Q  360 catt 363  Q
    ||||    
T  8081379 catt 8081376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 9 - 290
Target Start/End: Complemental strand, 32331201 - 32330932
Alignment:
Q  9 aacttaagtgtgataatgagtcggcattgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcataga 108  Q
    |||||| || ||||||||| ||| |||| ||||||||   |||||| |||||||| |||||||   || | |||||||||||| ||| |||||| | | |    
T  32331201 aacttatgtttgataatgaatcgacattttatctttctataaatcctgtttttcaagagaggatttaagaaatagaagttgatcgtctctttatgacaaa 32331102  T
Q  109 gaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattat 208  Q
    |||||| |||| || |||||||||||||| |||| ||||||| ||| ||||  |||| |||||||| |||||||| ||||| |||||||||  | |||||    
T  32331101 gaagatcctttctgacatcattaaaaccttttcaatgagctcaaataatcaattagccgatatcttcaccaaacctctacgtggacctcag-gtaattat 32331003  T
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttgattattctctatttattatagttga 290  Q
    |||||||||||  |||||||           ||| |||| |||| |||||||||||||||| ||||||||||||||||||||    
T  32331002 atatgtaacaaattggatgc-----------atgctccagcttgcgggggagtgttgattactctctatttattatagttga 32330932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 64; E-Value: 7e-28
Query Start/End: Original strand, 35 - 154
Target Start/End: Original strand, 4490444 - 4490562
Alignment:
Q  35 ttgtatctttcgtcaaatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaa 134  Q
    ||||||| ||| ||| |||| ||||||||||||||||| ||||| ||||||||||||||||||||||||| |||||||||  ||| | ||||||||||||    
T  4490444 ttgtatcgttcttcatatcc-gtttttcatgagaggactaaacacatagaagttgattgtcactttatcagagagaagatcatttctagcatcattaaaa 4490542  T
Q  135 cctcttcagtgagctccaat 154  Q
    ||||| | ||||||||||||    
T  4490543 cctctccggtgagctccaat 4490562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 21556 - 21772
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    ||||| |||||||| ||||| ||||| |||||||||||||||||||| || || |  || ||||| || | |||  |||| |||||||| |  || |  |    
T  21556 aatccggtttttcacgagagaacaaagcatatagaagttgattgtcatttcattagggaaaagattctctctggagtcatcaaaacctcatttgtcaatt 21655  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    | || ||||| || ||  |||||||||| ||| | |||||  | ||||| ||   ||| |||||| ||||| |||||||||||||||| |||| |||| |    
T  21656 ctaaggatcaacttgcaaatatctttactaaatctctacgaagtcctcaaataacttacatatgtgacaagatggatgcatatgatatgtatgctccacc 21755  T
Q  250 ttgagggggagtgttga 266  Q
    |||||||||||||||||    
T  21756 ttgagggggagtgttga 21772  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 156 - 276
Target Start/End: Complemental strand, 35702192 - 35702074
Alignment:
Q  156 atcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaacttgagg 255  Q
    ||||| |||| | |||||| | |||||| ||| |||||||| |||||| |||||||| ||| |||||| |||||||   ||| |||| |||| |||||||    
T  35702192 atcagttagccggtatcttcatcaaacctctatggggaccttagattggttatatatttaaaaagctgaatgcatag--tatgtatgctccatcttgagg 35702095  T
Q  256 gggagtgttgattattctcta 276  Q
    ||||   ||||||||||||||    
T  35702094 gggatctttgattattctcta 35702074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 30591737 - 30591680
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||||| |||||||||||| | |||| |||| ||||| ||||||||||||    
T  30591737 atatgtgacaagcttgatgcatatgatttgtatgctccagcttgaaggggagtgttga 30591680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 61; Significance: 4e-26; HSPs: 7)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 58 - 266
Target Start/End: Complemental strand, 10434663 - 10434455
Alignment:
Q  58 ttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagctccaatgat 157  Q
    ||||||||||||||| ||||| | ||||||| ||||||||||||||| ||||||||| ||||    ||||| |||||| ||||||||||| || ||| ||    
T  10434663 ttttcatgagaggactaaacacagagaagttaattgtcactttatcagagagaagatcctttcgaacatcactaaaacatcttcagtgagttctaataat 10434564  T
Q  158 cagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaacttgagggg 257  Q
     || ||||  ||||||| |  ||||| |||| |||||||    ||||||||||||||  |||||| ||||||||||||  ||||| | ||| |||||||     
T  10434563 tagttagccaatatcttcattaaacctctacagggaccttgacttgattatatatgtttcaagctagatgcatatgatggatatgcttcaatttgaggga 10434464  T
Q  258 gagtgttga 266  Q
    |||||||||    
T  10434463 gagtgttga 10434455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 100 - 219
Target Start/End: Complemental strand, 703606 - 703488
Alignment:
Q  100 tatcatagagaagatactttttggcatcattaaaacctcttcagtgagctccaatgatcagctagctgatatctttaccaaaccactacggggacctcag 199  Q
    ||||| |||||||||  ||| | |||||| |||||||||||| |||||||||||| ||||| | ||| ||||||| |||||| | ||| | ||||||  |    
T  703606 tatcaaagagaagatcatttctagcatcactaaaacctcttc-gtgagctccaataatcagttggctaatatcttcaccaaatccctatgaggacctggg 703508  T
Q  200 attgattatatatgtaacaa 219  Q
    ||||||||||||||||||||    
T  703507 attgattatatatgtaacaa 703488  T

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Target: chr2; HSP #3
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 38506372 - 38506588
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    ||||| |||||||| ||||| ||||| |||||||||||||| ||||| || || |  || ||||| || | |||  |||| |||||||| |  || |  |    
T  38506372 aatccggtttttcacgagagaacaaagcatatagaagttgactgtcatttcattagggaaaagattctctctggagtcatcaaaacctcatttgtcaatt 38506471  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    | || ||||| || || ||||||||||| ||| | |||||  | |||| |||   ||| |||||| ||||| |||||||||||||||| |||| |||| |    
T  38506472 ctaaggatcaacttgcagatatctttactaaatctctacgaagtcctcggataacttacatatgtgacaagatggatgcatatgatatgtatgctccacc 38506571  T
Q  250 ttgagggggagtgttga 266  Q
    |||||||||||||||||    
T  38506572 ttgagggggagtgttga 38506588  T

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Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 17727045 - 17727102
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||||| |||||||||||| | |||| |||| ||||||||||||||||||    
T  17727045 atatgtgacaagcttgatgcatatgatttgtatgctccagcttgagggggagtgttga 17727102  T

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Target: chr2; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 114
Target Start/End: Complemental strand, 32663285 - 32663221
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagat 114  Q
    |||||||||||||| ||||||||||| ||||| |||| ||| ||||||||| | | |||||||||    
T  32663285 aatccagtttttcacgagaggacaaagcatattgaaggtgactgtcactttcttagagagaagat 32663221  T

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Target: chr2; HSP #6
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 205 - 264
Target Start/End: Complemental strand, 38512475 - 38512416
Alignment:
Q  205 ttatatatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgtt 264  Q
    |||||||||||||||| | | | |||||||| |||||| ||||||||||||||| |||||    
T  38512475 ttatatatgtaacaagtttggttcatatgatttatatgctccaacttgagggggggtgtt 38512416  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 212 - 262
Target Start/End: Original strand, 31324078 - 31324128
Alignment:
Q  212 tgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtg 262  Q
    ||||||||||| | |||||||||||| |||| |||| ||||||||||||||    
T  31324078 tgtaacaagcttggtgcatatgatatgtatgctccatcttgagggggagtg 31324128  T

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Target: chr6 (Bit Score: 59; Significance: 7e-25; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 190 - 285
Target Start/End: Complemental strand, 1217660 - 1217561
Alignment:
Q  190 gggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaacttgag----ggggagtgttgattattctctatttattata 285  Q
    |||||||  |||||||||||||||||||||| ||||||||||||||||||||| |||| ||||||    |||||||||||||||||||||| ||||||||    
T  1217660 gggaccttggattgattatatatgtaacaagttggatgcatatgatatatatgatccagcttgaggcccggggagtgttgattattctctacttattata 1217561  T

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Target: chr6; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 260 - 357
Target Start/End: Complemental strand, 13329114 - 13329015
Alignment:
Q  260 gtgttgattattctctatttattatagttgatttagtttcgt--tttttgctttcatgagatattctctcttgtatataaacttgcatacatcattgtaa 357  Q
    ||||||||||||||||| |||||||  ||||||||||||| |  ||| || |||| ||||| |||||||| |||||||||   ||||||| |||||||||    
T  13329114 gtgttgattattctctacttattatgcttgatttagtttccttatttatgttttcttgagagattctctcgtgtatataagtgtgcatacgtcattgtaa 13329015  T

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Target: scaffold0411 (Bit Score: 57; Significance: 1e-23; HSPs: 1)
Name: scaffold0411
Description:

Target: scaffold0411; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 10127 - 10343
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    |||||||| ||||||||||||||||| ||||||||||||||||||||| || | |||||||||||  |    || ||||||| |||||| |  || |  |    
T  10127 aatccagtctttcatgagaggacaaagcatatagaagttgattgtcacgttcttatagagaagattatcaccggaatcattagaacctcctttgtcaatt 10226  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    |||| ||||| || ||||||||||||||  || | |||||  | ||||||||   ||| |||||| ||||| ||||||| |||||| ||||||  ||| |    
T  10227 ccaaggatcaacttgctgatatctttactgaatctctacgaagtcctcagataacttacatatgtgacaagatggatgcctatgatgtatatgcaccacc 10326  T
Q  250 ttgagggggagtgttga 266  Q
    |||||||||||||||||    
T  10327 ttgagggggagtgttga 10343  T

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Target: chr3 (Bit Score: 49; Significance: 6e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 50 - 266
Target Start/End: Original strand, 36500842 - 36501058
Alignment:
Q  50 aatccagtttttcatgagaggacaaaacatatagaagttgattgtcactttatcatagagaagatactttttggcatcattaaaacctcttcagtgagct 149  Q
    |||||||||||||| ||||||||||| ||||| |||||||| ||||||||| | | |||||||||  |    || ||||| | |||||| |  || |  |    
T  36500842 aatccagtttttcacgagaggacaaagcatattgaagttgactgtcactttcttagagagaagattatcaccggaatcatcagaacctcatttgtcaatt 36500941  T
Q  150 ccaatgatcagctagctgatatctttaccaaaccactacggggacctcagattgattatatatgtaacaagctggatgcatatgatatatatggtccaac 249  Q
    |||| ||||| || |||||||||||||| ||| | |||||| | |||| |||   ||| |||||| ||||| |||||||||||||| |||| |  ||| |    
T  36500942 ccaaggatcaacttgctgatatctttactaaatctctacggagtcctcggataacttacatatgtgacaagatggatgcatatgatgtatacgcaccacc 36501041  T
Q  250 ttgagggggagtgttga 266  Q
    |||||||||||||||||    
T  36501042 ttgagggggagtgttga 36501058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 12932468 - 12932411
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| |||||||||||||||| || | |||| ||||||||||||||||||    
T  12932468 atatgtgacaagatggatgcatatgatatgtacgctccaccttgagggggagtgttga 12932411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 15424595 - 15424538
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||| | |||||||||||||||| |||| |||| ||||||||||||||||||    
T  15424595 atatgtgacatgatggatgcatatgatatgtatgctccaccttgagggggagtgttga 15424538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0744 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0744
Description:

Target: scaffold0744; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Complemental strand, 6510 - 6453
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||||| |||||||||||||||| |||| |||| |||| |||||||||||||    
T  6510 atatgtgacaagatggatgcatatgatatgtatgctccaccttgcgggggagtgttga 6453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0071 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: scaffold0071
Description:

Target: scaffold0071; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 209 - 266
Target Start/End: Original strand, 37643 - 37700
Alignment:
Q  209 atatgtaacaagctggatgcatatgatatatatggtccaacttgagggggagtgttga 266  Q
    |||||| ||| | |||||||||||||||| |||| |||| ||||||||||||||||||    
T  37643 atatgtgacatgatggatgcatatgatatgtatgctccaccttgagggggagtgttga 37700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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