View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-4 (Length: 167)
Name: SO5819A-LTR4-TNT-insertion-4
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 148; Significance: 2e-78; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 148; E-Value: 2e-78
Query Start/End: Original strand, 7 - 158
Target Start/End: Complemental strand, 42037510 - 42037359
Alignment:
| Q |
7 |
agcaatctggatgagtgaacctagcacaacgggtggttgtagtataaaacaaattgaaaagaaagaaagtacaaagaagtagggttaatcgtgtatgatg |
106 |
Q |
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| T |
42037510 |
agcaatttggatgagtgaacctagcacaacgggtggttgtagtataaaacaaattgaaaagaaagaaagtacaaagaagtagggttaatcgtgtatgatg |
42037411 |
T |
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| Q |
107 |
agttcgaactcggtcaccacatcttttatgattgtgtatgtgtgttcaattg |
158 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
42037410 |
agttcgaactcggtcaccacatcttttatgattgtgtatgtgtgttcaattg |
42037359 |
T |
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