View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5819A-LTR4-TNT-insertion-5 (Length: 197)

Name: SO5819A-LTR4-TNT-insertion-5
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5819A-LTR4-TNT-insertion-5
SO5819A-LTR4-TNT-insertion-5
[»] chr2 (1 HSPs)
chr2 (27-142)||(35495492-35495607)
[»] chr8 (44 HSPs)
chr8 (156-190)||(20119406-20119440)
chr8 (156-190)||(20119956-20119990)
chr8 (156-190)||(20120323-20120357)
chr8 (156-190)||(20120506-20120540)
chr8 (156-190)||(20120689-20120723)
chr8 (156-190)||(20120872-20120906)
chr8 (156-190)||(20121092-20121126)
chr8 (156-190)||(20121275-20121309)
chr8 (156-190)||(20121458-20121492)
chr8 (156-190)||(20121641-20121675)
chr8 (156-190)||(20121824-20121858)
chr8 (156-190)||(20122008-20122042)
chr8 (156-190)||(20122192-20122226)
chr8 (156-190)||(20122924-20122958)
chr8 (156-190)||(20123106-20123140)
chr8 (156-190)||(20123654-20123688)
chr8 (156-190)||(20123837-20123871)
chr8 (156-190)||(20124204-20124238)
chr8 (156-190)||(20124387-20124421)
chr8 (156-190)||(20124570-20124604)
chr8 (156-190)||(20125485-20125519)
chr8 (156-190)||(20125668-20125702)
chr8 (156-190)||(20125851-20125885)
chr8 (156-190)||(20126035-20126069)
chr8 (156-190)||(20126218-20126252)
chr8 (156-190)||(20127134-20127168)
chr8 (156-190)||(20127317-20127351)
chr8 (156-190)||(20127500-20127534)
chr8 (156-190)||(20127684-20127718)
chr8 (156-190)||(20119039-20119073)
chr8 (156-190)||(20119223-20119257)
chr8 (156-190)||(20119589-20119623)
chr8 (156-190)||(20122375-20122409)
chr8 (156-190)||(20122741-20122775)
chr8 (156-190)||(20123289-20123323)
chr8 (156-190)||(20123471-20123505)
chr8 (156-190)||(20124753-20124787)
chr8 (156-190)||(20124936-20124970)
chr8 (156-190)||(20125302-20125336)
chr8 (156-190)||(20126401-20126435)
chr8 (156-190)||(20126585-20126619)
chr8 (156-190)||(20126768-20126802)
chr8 (156-190)||(20126951-20126985)
chr8 (157-190)||(20124021-20124054)
[»] scaffold1744 (1 HSPs)
scaffold1744 (156-190)||(28-62)
[»] chr7 (3 HSPs)
chr7 (156-185)||(46149940-46149969)
chr7 (156-185)||(46150123-46150152)
chr7 (156-185)||(46150672-46150701)
[»] chr3 (5 HSPs)
chr3 (156-185)||(3795195-3795224)
chr3 (156-185)||(3795744-3795773)
chr3 (156-185)||(3795927-3795956)
chr3 (156-185)||(3796110-3796139)
chr3 (156-185)||(3796659-3796688)


Alignment Details
Target: chr2 (Bit Score: 116; Significance: 3e-59; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 116; E-Value: 3e-59
Query Start/End: Original strand, 27 - 142
Target Start/End: Complemental strand, 35495607 - 35495492
Alignment:
Q  27 actctccaatctccatccttcaagcatgacccaagctggagggaagacacttgcagaatataaaataattcttgataaatatacacatagcaactaagca 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  35495607 actctccaatctccatccttcaagcatgacccaagctggagggaagacacttgcagaatataaaataattcttgataaatatacacatagcaactaagca 35495508  T
Q  127 tgatagtgaccaattg 142  Q
    ||||||||||||||||    
T  35495507 tgatagtgaccaattg 35495492  T

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Target: chr8 (Bit Score: 35; Significance: 0.00000000007; HSPs: 44)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20119440 - 20119406
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20119440 gaggtacgtcatccggacgaactatcacctaattg 20119406  T

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Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20119990 - 20119956
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20119990 gaggtacgtcatccggacgaactatcacctaattg 20119956  T

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Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20120357 - 20120323
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20120357 gaggtacgtcatccggacgaactatcacctaattg 20120323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20120540 - 20120506
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20120540 gaggtacgtcatccggacgaactatcacctaattg 20120506  T

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Target: chr8; HSP #5
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20120723 - 20120689
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20120723 gaggtacgtcatccggacgaactatcacctaattg 20120689  T

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Target: chr8; HSP #6
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20120906 - 20120872
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20120906 gaggtacgtcatccggacgaactatcacctaattg 20120872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20121092 - 20121126
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20121092 gaggtacgtcatccggacgaactatcacctaattg 20121126  T

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Target: chr8; HSP #8
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20121275 - 20121309
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20121275 gaggtacgtcatccggacgaactatcacctaattg 20121309  T

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Target: chr8; HSP #9
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20121458 - 20121492
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20121458 gaggtacgtcatccggacgaactatcacctaattg 20121492  T

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Target: chr8; HSP #10
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20121641 - 20121675
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20121641 gaggtacgtcatccggacgaactatcacctaattg 20121675  T

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Target: chr8; HSP #11
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20121824 - 20121858
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20121824 gaggtacgtcatccggacgaactatcacctaattg 20121858  T

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Target: chr8; HSP #12
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20122008 - 20122042
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20122008 gaggtacgtcatccggacgaactatcacctaattg 20122042  T

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Target: chr8; HSP #13
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20122192 - 20122226
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20122192 gaggtacgtcatccggacgaactatcacctaattg 20122226  T

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Target: chr8; HSP #14
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20122924 - 20122958
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20122924 gaggtacgtcatccggacgaactatcacctaattg 20122958  T

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Target: chr8; HSP #15
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20123106 - 20123140
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20123106 gaggtacgtcatccggacgaactatcacctaattg 20123140  T

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Target: chr8; HSP #16
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20123654 - 20123688
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20123654 gaggtacgtcatccggacgaactatcacctaattg 20123688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20123837 - 20123871
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20123837 gaggtacgtcatccggacgaactatcacctaattg 20123871  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20124204 - 20124238
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20124204 gaggtacgtcatccggacgaactatcacctaattg 20124238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20124387 - 20124421
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20124387 gaggtacgtcatccggacgaactatcacctaattg 20124421  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20124570 - 20124604
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20124570 gaggtacgtcatccggacgaactatcacctaattg 20124604  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20125485 - 20125519
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20125485 gaggtacgtcatccggacgaactatcacctaattg 20125519  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20125668 - 20125702
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20125668 gaggtacgtcatccggacgaactatcacctaattg 20125702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20125851 - 20125885
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20125851 gaggtacgtcatccggacgaactatcacctaattg 20125885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20126035 - 20126069
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20126035 gaggtacgtcatccggacgaactatcacctaattg 20126069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20126218 - 20126252
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20126218 gaggtacgtcatccggacgaactatcacctaattg 20126252  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20127134 - 20127168
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20127134 gaggtacgtcatccggacgaactatcacctaattg 20127168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20127317 - 20127351
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20127317 gaggtacgtcatccggacgaactatcacctaattg 20127351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20127500 - 20127534
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20127500 gaggtacgtcatccggacgaactatcacctaattg 20127534  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20127684 - 20127718
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||||||||    
T  20127684 gaggtacgtcatccggacgaactatcacctaattg 20127718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20119073 - 20119039
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||||||||||||||||||| ||||    
T  20119073 gaggtacgtcatccggacgaactatcacctcattg 20119039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20119257 - 20119223
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  20119257 gaggtacgtcatccggacgaactgtcacctaattg 20119223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 20119623 - 20119589
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||||||||||| ||||||||||||||||||||    
T  20119623 gaggtacgtcatccagacgaactatcacctaattg 20119589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20122375 - 20122409
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||| ||||||||||||||||||||||||||||    
T  20122375 gaggtaggtcatccggacgaactatcacctaattg 20122409  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20122741 - 20122775
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  20122741 gaggtacgtcatccggacgaactgtcacctaattg 20122775  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20123289 - 20123323
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  20123289 gaggtacgtcatccggacgaactgtcacctaattg 20123323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20123471 - 20123505
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||| |||||||||||||||||||||||||    
T  20123471 gaggtacgtgatccggacgaactatcacctaattg 20123505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20124753 - 20124787
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||| ||||||||||||||||||||||||||||    
T  20124753 gaggtaggtcatccggacgaactatcacctaattg 20124787  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20124936 - 20124970
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||| ||||||||||||||||||||||||||||||    
T  20124936 gaggaacgtcatccggacgaactatcacctaattg 20124970  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20125302 - 20125336
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  20125302 gaggtacgtcatccggacgaactgtcacctaattg 20125336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20126401 - 20126435
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||| ||||||||||||||||||||||||||||    
T  20126401 gaggtaggtcatccggacgaactatcacctaattg 20126435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20126585 - 20126619
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    |||||| ||||||||||||||||||||||||||||    
T  20126585 gaggtaggtcatccggacgaactatcacctaattg 20126619  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20126768 - 20126802
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  20126768 gaggtacgtcatccggacgaactgtcacctaattg 20126802  T

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Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Original strand, 20126951 - 20126985
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||| |||||||||||    
T  20126951 gaggtacgtcatccggacgaactgtcacctaattg 20126985  T

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Target: chr8; HSP #44
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 157 - 190
Target Start/End: Original strand, 20124021 - 20124054
Alignment:
Q  157 aggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||| ||||||||||||||||||||    
T  20124021 aggtacgtcatccagacgaactatcacctaattg 20124054  T

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Target: scaffold1744 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: scaffold1744
Description:

Target: scaffold1744; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 190
Target Start/End: Complemental strand, 62 - 28
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacctaattg 190  Q
    ||||||||||||||||||||||||| |||||||||    
T  62 gaggtacgtcatccggacgaactataacctaattg 28  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 46149940 - 46149969
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  46149940 gaggtacgtcatccggacgaactatcacct 46149969  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 46150123 - 46150152
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  46150123 gaggtacgtcatccggacgaactatcacct 46150152  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 46150672 - 46150701
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  46150672 gaggtacgtcatccggacgaactatcacct 46150701  T

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Target: chr3 (Bit Score: 30; Significance: 0.00000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 3795195 - 3795224
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  3795195 gaggtacgtcatccggacgaactatcacct 3795224  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 3795744 - 3795773
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  3795744 gaggtacgtcatccggacgaactatcacct 3795773  T

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Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 3795927 - 3795956
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  3795927 gaggtacgtcatccggacgaactatcacct 3795956  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 3796110 - 3796139
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  3796110 gaggtacgtcatccggacgaactatcacct 3796139  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 156 - 185
Target Start/End: Original strand, 3796659 - 3796688
Alignment:
Q  156 gaggtacgtcatccggacgaactatcacct 185  Q
    ||||||||||||||||||||||||||||||    
T  3796659 gaggtacgtcatccggacgaactatcacct 3796688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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