View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-6 (Length: 628)
Name: SO5819A-LTR4-TNT-insertion-6
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-6 |
 | |
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Alignment Details
Target: chr8 (Bit Score: 613; Significance: 0; HSPs: 9)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 613; E-Value: 0
Query Start/End: Original strand, 8 - 620
Target Start/End: Original strand, 4144253 - 4144865
Alignment:
| Q |
8 |
cttctaacattcattcacacaccctcctcttacttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccac |
107 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144253 |
cttctaacattcattcacacaccctcctcttacttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccac |
4144352 |
T |
|
| Q |
108 |
aaaagataagcacatatagccaaagtacatgctcctatccccccagcaatggcaatgattaaaacactcttgttacgccctttttcctttttagtaaccg |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4144353 |
aaaagataagcacatatagccaaagtacatgctcctatccccccagcaatggcaatgattaaaacactcttgttacgccctttttcctttttagtaaccg |
4144452 |
T |
|
| Q |
208 |
caactgtaaggacccaaattcagattattagagtctaaaaacttaaattattttgatattcaataatttaaagaaaatttaccaagttctgccggcacac |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
4144453 |
caactgtaaggacccaaattcagattattagagtctaaaaacttaaattattttgatattcaataatttaaagaaaatttaccaagttctgccggcacac |
4144552 |
T |
|
| Q |
308 |
gaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctatagaaggatcatatgcatatgccaa |
407 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4144553 |
gaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctatagaaggatcatatgcatatgccaa |
4144652 |
T |
|
| Q |
408 |
acaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttcatattatgatgcaccaaaaat |
507 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4144653 |
acaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttcatattatgatgcaccaaaaat |
4144752 |
T |
|
| Q |
508 |
gcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgttctcacacaaccattagtccaatttcctaaactcc |
607 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
4144753 |
gcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgttctcacacaaccattagtccaatttcctaaactcc |
4144852 |
T |
|
| Q |
608 |
actccaccgaatt |
620 |
Q |
| |
|
||||||||||||| |
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|
| T |
4144853 |
actccaccgaatt |
4144865 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 198; E-Value: 1e-107
Query Start/End: Original strand, 287 - 620
Target Start/End: Original strand, 4162885 - 4163218
Alignment:
| Q |
287 |
taccaagttctgccggcacacgaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctataga |
386 |
Q |
| |
|
|||| |||||||| || ||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |||| | |
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|
| T |
4162885 |
tacctagttctgctggaacacgaatgaagagatcaactccgctagtaggaaatttctgcaaatcaattaactcactactccaatacatacaacgtataaa |
4162984 |
T |
|
| Q |
387 |
aggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttc |
486 |
Q |
| |
|
||||||||||||||| |||||||||| ||||||||||||||||||||||| ||| |||||| || || || ||||||||||| |||||||||||||||| |
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|
| T |
4162985 |
aggatcatatgcataagccaaacaagaacaatttgccaaacaatctgttctacacttatctcgactaacatctgatctctcagcaaaatcaggaggtttc |
4163084 |
T |
|
| Q |
487 |
atattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgttctcacacaaccat |
586 |
Q |
| |
|
|||| |||||||||||||| ||||||||| |||| |||||||||||||||||||||||||||||||||||| ||||||| | ||||||||||||| |
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|
| T |
4163085 |
gtattgggatgcaccaaaaatttatcttgtttaactacgcttgatccattcttcaccatctcacacttcaagttcattccttctttcctcacacaaccat |
4163184 |
T |
|
| Q |
587 |
tagtccaatttcctaaactccactccaccgaatt |
620 |
Q |
| |
|
|||||||||| | | |||||||||||||| |||| |
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|
| T |
4163185 |
tagtccaattccttgaactccactccaccaaatt |
4163218 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 287 - 620
Target Start/End: Original strand, 4152532 - 4152868
Alignment:
| Q |
287 |
taccaagttctgccggcacacgaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctataga |
386 |
Q |
| |
|
|||| ||||||||||||||||||| |||||||||||||||||| |||||||||||||||||||||||||||| | | |||||||||||||| |||||| |
|
|
| T |
4152532 |
tacctagttctgccggcacacgaacgaagagatcaactccgccattaggaaatttctgcaaatcaattaactctccagtccaatacatacaaaatataga |
4152631 |
T |
|
| Q |
387 |
aggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattacc---agctgatctctcattaaaatcaggaggt |
483 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||| |||||| |||||||||| | | | || |||| ||||||||||||||||| |
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|
| T |
4152632 |
aggatcatatgcatatgccaaacaagaacaatttgccaaacaatctgctccacacttatcttgatcagcattatttgttctcacattaaaatcaggaggt |
4152731 |
T |
|
| Q |
484 |
ttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgttctcacacaac |
583 |
Q |
| |
|
||||||||||||| |||| |||| |||||||||| |||| | |||||||||||||||||||||||||||| ||||||| ||||||| | |||||||||| |
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|
| T |
4152732 |
ttcatattatgatacaccttaaatccatcttgtttaactatacttgatccattcttcaccatctcacactttaagttcattccttctttcctcacacaac |
4152831 |
T |
|
| Q |
584 |
cattagtccaatttcctaaactccactccaccgaatt |
620 |
Q |
| |
|
||||||||||||| ||||||||||| ||||| ||||| |
|
|
| T |
4152832 |
cattagtccaattgcctaaactccattccacagaatt |
4152868 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 171; E-Value: 2e-91
Query Start/End: Original strand, 287 - 620
Target Start/End: Original strand, 4123182 - 4123518
Alignment:
| Q |
287 |
taccaagttctgc---cggcacacgaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctat |
383 |
Q |
| |
|
||||||||||||| |||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| | | |||||||||||||| ||| |
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|
| T |
4123182 |
taccaagttctgcgcccggcactcgaatgaagagatcaactccaccataaggaaatttctgcaaatcaattaactctccagtccaatacatacaaaatat |
4123281 |
T |
|
| Q |
384 |
agaaggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggt |
483 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||||||||||||||| |||||| |||||| || | || | |||||||| |||||||||| | |
|
|
| T |
4123282 |
agaaggatcatatgcatatgccaaacaagaacaatttgccaaacaatcttctccacacttatctatatcaacatttaatctctcagcaaaatcaggaact |
4123381 |
T |
|
| Q |
484 |
ttcatattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgttctcacacaac |
583 |
Q |
| |
|
||||||||||||| |||| |||| ||||||| || |||| | |||||||||||||||||||||||||||||||||||||||| ||| | |||||||||| |
|
|
| T |
4123382 |
ttcatattatgatacaccttaaatccatcttgcttaactacagttgatccattcttcaccatctcacacttcaagttcaatccctctttcctcacacaac |
4123481 |
T |
|
| Q |
584 |
cattagtccaatttcctaaactccactccaccgaatt |
620 |
Q |
| |
|
||||||||||||||||||||||||| ||||| ||||| |
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|
| T |
4123482 |
cattagtccaatttcctaaactccattccacagaatt |
4123518 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 170; E-Value: 6e-91
Query Start/End: Original strand, 287 - 620
Target Start/End: Original strand, 4133727 - 4134060
Alignment:
| Q |
287 |
taccaagttctgccggcacacgaatgaagagatcaactccgccggtaggaaatttctgcaaatcaattaactcgctactccaatacatacaacctataga |
386 |
Q |
| |
|
|||||||||||||||| ||||| ||||||||||||||||| || |||||| || |||||| ||||||| || | ||||||||||| ||||||||| | |
|
|
| T |
4133727 |
taccaagttctgccgggacacggatgaagagatcaactcctccatgaggaaagttttgcaaaccaattaagtctccactccaatacacgcaacctatata |
4133826 |
T |
|
| Q |
387 |
aggatcatatgcatatgccaaacaagtacaatttgccaaacaatctgttccacatttatcttgattaccagctgatctctcattaaaatcaggaggtttc |
486 |
Q |
| |
|
| |||||||||||||||||||||||| ||||||| ||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
4133827 |
acgatcatatgcatatgccaaacaagaacaatttaccaaacaatctgttctacatttatcttgattaccagctgatctctcattaaaatcaggaactttc |
4133926 |
T |
|
| Q |
487 |
atattatgatgcaccaaaaatgcatcttgtttcactagatttgatccattcttcaccatctcacacttcaagttcaatccttctgttctcacacaaccat |
586 |
Q |
| |
|
||||| ||| ||||||||| |||||||||| | | ||||||||| |||||| |||||||||||||||||||| |||| |||| ||||||||||||| |
|
|
| T |
4133927 |
atattccgattcaccaaaaaaccatcttgtttaaattcatttgatccggtcttcaacatctcacacttcaagttcattcctgctgtcctcacacaaccat |
4134026 |
T |
|
| Q |
587 |
tagtccaatttcctaaactccactccaccgaatt |
620 |
Q |
| |
|
|||||||||| | | ||||||| |||||| |||| |
|
|
| T |
4134027 |
tagtccaattccttgaactccattccaccaaatt |
4134060 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 39 - 200
Target Start/End: Original strand, 4152132 - 4152293
Alignment:
| Q |
39 |
acttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatg |
138 |
Q |
| |
|
|||||||| |||||||||||||||||| ||| |||||||||| ||||||| | |||||||| ||||| |||||||||||||||||| |||| || || |
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|
| T |
4152132 |
acttcaatgcaagtttgaaatagaaatcaggaaactttacctttatgcctagcagaacatttcctccataaaagataagcacatataaccaagataagtg |
4152231 |
T |
|
| Q |
139 |
ctcctatccccccagcaatggcaatgattaaaacactcttgttacgccctttttccttttta |
200 |
Q |
| |
|
|||||||| |||||||||| |||||||||||| ||||||||| | ||||||||||||||| |
|
|
| T |
4152232 |
ctcctatcaccccagcaattacaatgattaaaaaactcttgttgtgtcctttttccttttta |
4152293 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 41 - 198
Target Start/End: Original strand, 4161669 - 4161823
Alignment:
| Q |
41 |
ttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgct |
140 |
Q |
| |
|
||||||||||||||| ||| |||||||||||||||||| ||||||| | || ||||| |||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
4161669 |
ttcaattcaagtttgcaatgacaataaggcaactttacctgtatgcctagcagaccatttcctccacaaaagataagcacatataaccaagataaatgct |
4161768 |
T |
|
| Q |
141 |
cctatccccccagcaatggcaatgattaaaacactcttgttacgccctttttcctttt |
198 |
Q |
| |
|
|||| ||||| ||||| ||||||||||||| ||||||||| |||||||||||||| |
|
|
| T |
4161769 |
cctaaacccccggcaattgcaatgattaaaaaactcttgtt---ccctttttcctttt |
4161823 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #8
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 41 - 200
Target Start/End: Original strand, 4133288 - 4133447
Alignment:
| Q |
41 |
ttcaattcaagtttgaaatagaaataaggcaactttacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgct |
140 |
Q |
| |
|
||||||||||||||||| ||||||| ||| |||||||||| ||||||| | |||| | || |||||||||||||||||||| | |||||||| ||||| |
|
|
| T |
4133288 |
ttcaattcaagtttgaactagaaatcaggaaactttacctttatgcctagcagaacgtcttagccacaaaagataagcacatacaaccaaagtaaatgct |
4133387 |
T |
|
| Q |
141 |
cctatccccccagcaatggcaatgattaaaacactcttgttacgccctttttccttttta |
200 |
Q |
| |
|
|| | ||||||||||| | ||||||||||| || ||| || |||| |||||||||||| |
|
|
| T |
4133388 |
cccgtgcccccagcaattgaaatgattaaaaaacccttcttgtgccccttttccttttta |
4133447 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #9
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 76 - 200
Target Start/End: Original strand, 4122799 - 4122923
Alignment:
| Q |
76 |
tacctctatgcctggttgaacattttctccacaaaagataagcacatatagccaaagtacatgctcctatccccccagcaatggcaatgattaaaacact |
175 |
Q |
| |
|
||||| ||||||| | |||||||| ||||| |||||||||||||||||| |||| || |||||||||| |||||||||| |||||||||||| ||| |
|
|
| T |
4122799 |
tacctttatgcctagcagaacatttcctccataaaagataagcacatataaccaagataagtgctcctatcaccccagcaattacaatgattaaaaaact |
4122898 |
T |
|
| Q |
176 |
cttgttacgccctttttccttttta |
200 |
Q |
| |
|
|||||| | ||||||||||||||| |
|
|
| T |
4122899 |
cttgttgtgtcctttttccttttta |
4122923 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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