View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5819A-LTR4-TNT-insertion-7 (Length: 804)
Name: SO5819A-LTR4-TNT-insertion-7
Description: SO5819A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5819A-LTR4-TNT-insertion-7 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 723; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 723; E-Value: 0
Query Start/End: Original strand, 12 - 796
Target Start/End: Original strand, 36691204 - 36691988
Alignment:
| Q |
12 |
caacagattcataggattaggatatgtgtaggtcgcaaacggaacattagtattacttaaacaatcacttgtttggccaaatttcttccccttaatcagc |
111 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
36691204 |
caacagattcataggattaggatatgtgtaggtcgcaaacggaacattagtattacttaaacaatcacttgtttggccaaatttcttccccttaatcagc |
36691303 |
T |
|
| Q |
112 |
tcaaaaagcaaacagccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggata |
211 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36691304 |
tcaaaaagcaaacaaccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataaacatggcccctccaaaattggata |
36691403 |
T |
|
| Q |
212 |
ttttgggctcaaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctat |
311 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36691404 |
ttttgggctcaaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatggaggcaacataaacctcttgctat |
36691503 |
T |
|
| Q |
312 |
cccaagtgcaatttgaataacccttgaccatcctagtgttttagtatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaa |
411 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36691504 |
cccaagtgcaatttgaataacccttgaccatcctagtgttttagtatcatcattcaaccaatcagaaagttttccatttgaaatgtattgatacaccaaa |
36691603 |
T |
|
| Q |
412 |
actctttcannnnnnncttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatttctgattcgaatcttt |
511 |
Q |
| |
|
||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36691604 |
actctttcatttttttcttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaatctttatttctgattcgaatcttt |
36691703 |
T |
|
| Q |
512 |
tgatacacaattgagaatcatgtagtctcttagctgcgaaaatgcaaccgttggaaagtgttgttttgtacattatcccagtcactcccaccccaatgac |
611 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
36691704 |
tgatacacaattgagaatcatgtagtctcttagctgcgaaaatgcaaccgttggaaagtgttgttttgtacattatcccagtcactcccaccccaatgac |
36691803 |
T |
|
| Q |
612 |
attgtccttactaaagtattgcgttgcatgatagaattttatgaagttcatcttataagccaaccgtccaactttattgatgtgttgatttcatccatac |
711 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
36691804 |
attgtccttactaaagtattgcgttgcatgatagaattttgtgaagttcatcttataagccaaccgtccaactttattgatctgttgatttcatccatac |
36691903 |
T |
|
| Q |
712 |
cnnnnnnncataacagacagcaatattatgttattttatgagtatagatatccataaaaacatttgcatatgatcagtgagatta |
796 |
Q |
| |
|
| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
36691904 |
caaaaaaacataacagacaacaatattatgttattttatgagtatagatatccataaaaacatttgcatttgatcagtgagatta |
36691988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 180 - 225
Target Start/End: Original strand, 36673615 - 36673660
Alignment:
| Q |
180 |
attcataaacatggcccctccaaaattggatattttgggctcaaaa |
225 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||| |||||| |
|
|
| T |
36673615 |
attcataaatttggcctctccaaaattggatattttgggttcaaaa |
36673660 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 187; Significance: 1e-101; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 88 - 709
Target Start/End: Original strand, 23654964 - 23655582
Alignment:
| Q |
88 |
ccaaatttcttccccttaatcagctcaaaaagcaaacagccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataa |
187 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| || ||||||||||| | || |||||||||||||| |
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|
| T |
23654964 |
ccaaatttattcccattaatcagctcaaaaagcaaacaaccaaagtcagaaacatccttcttctcaagtcctatgtttttttccagatcattattcataa |
23655063 |
T |
|
| Q |
188 |
acatggcccctccaaaattggatattttgggctcaaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatg |
287 |
Q |
| |
|
||||| |||||| ||||||||||| || ||||||||| | ||||||| ||||||||| || || ||||||| ||||| | |||||||||||||||||| |
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|
| T |
23655064 |
acatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaatttatattgagatggagcatatgcaagctatgatg |
23655163 |
T |
|
| Q |
288 |
gaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttttagtatcatcattcaaccaatcagaaagttttcca |
387 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| ||| | ||||||| || |||| | |||||| || ||||| |
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|
| T |
23655164 |
gaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttagt---ttctttcagcttatcagatagccttcca |
23655260 |
T |
|
| Q |
388 |
tttgaaatgtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaa |
487 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
23655261 |
tttgacatgtattgatacaccaaaattctttcattgtttccttcttctatgctaaaaccaatcaatgaaactatgtttctatgactgtattgtcccaaaa |
23655360 |
T |
|
| Q |
488 |
tctttatttctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctgcgaaaatgcaaccgttggaaagtgttgttttgtacattat |
587 |
Q |
| |
|
|| |||||||| | || || ||||||||| |||||||||||| |||||||||| | || || | | |||||| | ||| | || ||||||||||| |
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|
| T |
23655361 |
tcattatttctaactcaaaccttttgataattgattgagaatcatatagtctcttaaccgccaagaaacgaccgttcggaagagctgccttgtacattat |
23655460 |
T |
|
| Q |
588 |
cccagtcactcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttatgaagttcatcttataagccaaccgtccaacttta |
687 |
Q |
| |
|
|| | ||||| || ||||||||||||||| ||||| |||| ||||||||| | | |||| |||||||||| |||||| ||| |||||||||||| |
|
|
| T |
23655461 |
tccgattactccaacaccaatgacattgtccaagctaaaatatttggttgcatgacaaagttttgtgaagttcattctataagtcaatcgtccaacttta |
23655560 |
T |
|
| Q |
688 |
ttgatgtgttgatttcatccat |
709 |
Q |
| |
|
|||| || ||| |||||||| |
|
|
| T |
23655561 |
ctgatctggtgaagtcatccat |
23655582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 88 - 709
Target Start/End: Complemental strand, 23803606 - 23802988
Alignment:
| Q |
88 |
ccaaatttcttccccttaatcagctcaaaaagcaaacagccaaaatcataaacatccttctttccagatcctatgttttggttcacatcattattcataa |
187 |
Q |
| |
|
|||||||| ||||| ||||||||||||||||||||||| ||||| ||| ||||||||||||| || ||||||||||| | || |||||||||||||| |
|
|
| T |
23803606 |
ccaaatttattcccattaatcagctcaaaaagcaaacaaccaaagtcagaaacatccttcttctcaagtcctatgtttttttccagatcattattcataa |
23803507 |
T |
|
| Q |
188 |
acatggcccctccaaaattggatattttgggctcaaaagtgttccctagcaagatacactcggagcttatattaagatgaaccatatgcaagctatgatg |
287 |
Q |
| |
|
||||| |||||| ||||||||||| || ||||||||| | ||||||| ||||||||| || || ||||||| ||||| | |||||||||||||||||| |
|
|
| T |
23803506 |
acatgatccctccgaaattggatatctttggctcaaaatttttccctaacaagatacagtcagaatttatattgagatggagcatatgcaagctatgatg |
23803407 |
T |
|
| Q |
288 |
gaggcaacataaacctcttgctatcccaagtgcaatttgaataacccttgaccatcctagtgttttagtatcatcattcaaccaatcagaaagttttcca |
387 |
Q |
| |
|
|||||||||||| |||||||||| ||||||||||||| ||||||| |||||||| ||| | ||||||| || |||| | |||||| || ||||| |
|
|
| T |
23803406 |
gaggcaacataagcctcttgctacaccaagtgcaattttaataacctttgaccattctaattttttagt---ttctttcagcttatcagatagccttcca |
23803310 |
T |
|
| Q |
388 |
tttgaaatgtattgatacaccaaaactctttcannnnnnncttcatctatgcagaaaccaatcaagggaagtatgtttctatgactgtattgtcccaaaa |
487 |
Q |
| |
|
||||| ||||||||||||||||||| ||||||| |||| ||||||| ||||||||||| | || ||||||||||||||||||||||||||||| |
|
|
| T |
23803309 |
tttgacatgtattgatacaccaaaattctttcattgtttccttcttctatgctaaaaccaatcaatgaaactatgtttctatgactgtattgtcccaaaa |
23803210 |
T |
|
| Q |
488 |
tctttatttctgattcgaatcttttgatacacaattgagaatcatgtagtctcttagctgcgaaaatgcaaccgttggaaagtgttgttttgtacattat |
587 |
Q |
| |
|
|| |||||||| | || || ||||||||| |||||||||||| |||||||||| | || || | | |||||| | ||| | || ||||||||||| |
|
|
| T |
23803209 |
tcattatttctaactcaaaccttttgataattgattgagaatcatatagtctcttaaccgccaagaaacgaccgttcggaagagctgccttgtacattat |
23803110 |
T |
|
| Q |
588 |
cccagtcactcccaccccaatgacattgtccttactaaagtattgcgttgcatgatagaattttatgaagttcatcttataagccaaccgtccaacttta |
687 |
Q |
| |
|
|| | ||||| || ||||||||||||||| ||||| |||| ||||||||| | | |||| |||||||||| |||||| ||| |||||||||||| |
|
|
| T |
23803109 |
tccgattactccaacaccaatgacattgtccaagctaaaatatttggttgcatgacaaagttttgtgaagttcattctataagtcaatcgtccaacttta |
23803010 |
T |
|
| Q |
688 |
ttgatgtgttgatttcatccat |
709 |
Q |
| |
|
|||| || ||| |||||||| |
|
|
| T |
23803009 |
ctgatctggtgaagtcatccat |
23802988 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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