View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5821A-LTR4-TNT-insertion-3 (Length: 287)
Name: SO5821A-LTR4-TNT-insertion-3
Description: SO5821A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5821A-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 253; Significance: 1e-141; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 253; E-Value: 1e-141
Query Start/End: Original strand, 28 - 280
Target Start/End: Complemental strand, 22779423 - 22779171
Alignment:
| Q |
28 |
aattctagtattcatttcagtcgacatgcatgtgccacttaaccatacaatttaagagtcttctaaacttgaatcaaagtacatacaatacacacattat |
127 |
Q |
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| T |
22779423 |
aattctagtattcatttcagtcgacatgcatgtgccacttaaccatacaatttaagagtcttctaaacttgaatcaaagtacatacaatacacacattat |
22779324 |
T |
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| Q |
128 |
aagaggacttttataggtaataacttggcgcaggtaaggggtggatagatttgggaaagtagttttcaaatttggagttaggtatctactactttcttat |
227 |
Q |
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| T |
22779323 |
aagaggacttttataggtaataacttggcgcaggtaaggggtggatagatttgggaaagtagttttcaaatttggagttaggtatctactactttcttat |
22779224 |
T |
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| Q |
228 |
ctatgaaatgtttaatttccacaactaccaagcatcggttccttaatcaattg |
280 |
Q |
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| T |
22779223 |
ctatgaaatgtttaatttccacaactaccaagcatcggttccttaatcaattg |
22779171 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 159 - 219
Target Start/End: Original strand, 9151382 - 9151441
Alignment:
| Q |
159 |
aggtaaggggtggatagatttgggaaagtagttttcaaatttggagttaggtatctactac |
219 |
Q |
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| T |
9151382 |
aggtaaggggtggataaatttgagaaagtagtttt-aaatttggagttaggtatccactac |
9151441 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 60 - 209
Target Start/End: Original strand, 19095516 - 19095664
Alignment:
| Q |
60 |
tgccacttaaccatacaatttaagagtc-ttctaaacttgaatcaaagtacatacaatacacacattataagaggacttttataggtaataacttggcgc |
158 |
Q |
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| T |
19095516 |
tgccacttaaccatacaacttga-agacattctaaacgtgaaatgaagtacatacaatacacccagttttggaggacttt-acaggttataactatgctt |
19095613 |
T |
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| Q |
159 |
aggtaaggggtggatagatttgggaaagtagttttcaaatttggagttagg |
209 |
Q |
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|||||| ||||||||| |||| |||||||||||||||| |||||||||||| |
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| T |
19095614 |
aggtaatgggtggataaattttggaaagtagttttcaactttggagttagg |
19095664 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 76 - 221
Target Start/End: Complemental strand, 9934170 - 9934028
Alignment:
| Q |
76 |
aatttaagagtcttctaaacttgaatcaaagtacatacaatacacacattataagaggacttttataggtaataacttggcgcaggtaaggggtggatag |
175 |
Q |
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|||||||||| |||||||| |||||||||| ||||||| ||||||| | | ||| || ||| | | || |||||||||| ||||||| ||||||| | |
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| T |
9934170 |
aatttaagagctttctaaacgcgaatcaaagtgcatacaacacacacactcttagaagattttaacaagttataacttggcttaggtaagaggtggat-g |
9934072 |
T |
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| Q |
176 |
atttgggaaagtagttttcaaatttggagttaggtatctactactt |
221 |
Q |
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| T |
9934071 |
atttcgtaaagtagtattgaa--ttggagttaggtttctactactt |
9934028 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 47 - 123
Target Start/End: Original strand, 26612957 - 26613033
Alignment:
| Q |
47 |
gtcgacatgcatgtgccacttaaccatacaatttaagagtcttctaaacttgaatcaaagtacatacaatacacaca |
123 |
Q |
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||||||||||| |||||||| |||||||||||| |||| |||||||| |||||||||||||||||||| ||||| |
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| T |
26612957 |
gtcgacatgcacatgccacttgaccatacaatttgagagcattctaaacaagaatcaaagtacatacaatatacaca |
26613033 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 97 - 138
Target Start/End: Complemental strand, 17837878 - 17837837
Alignment:
| Q |
97 |
tgaatcaaagtacatacaatacacacattataagaggacttt |
138 |
Q |
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|||||||||||| |||||||||||||||||| ||||| |||| |
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| T |
17837878 |
tgaatcaaagtatatacaatacacacattattagagggcttt |
17837837 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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