View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5821A-LTR4-TNT-insertion-5 (Length: 202)

Name: SO5821A-LTR4-TNT-insertion-5
Description: SO5821A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5821A-LTR4-TNT-insertion-5
SO5821A-LTR4-TNT-insertion-5
[»] scaffold0164 (2 HSPs)
scaffold0164 (7-68)||(6405-6466)
scaffold0164 (34-68)||(14313-14347)
[»] chr6 (2 HSPs)
chr6 (7-68)||(8847763-8847824)
chr6 (143-194)||(8847632-8847683)
[»] chr2 (2 HSPs)
chr2 (7-68)||(24070120-24070181)
chr2 (143-194)||(24070256-24070307)


Alignment Details
Target: scaffold0164 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: scaffold0164
Description:

Target: scaffold0164; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 6405 - 6466
Alignment:
Q  7 acaaagaacattcaggcagtcaattgacattgcgattgtggcactggagtaagcactctaca 68  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  6405 acaaagaacattcaggcagtcaattggcattgcgattgtggcactggagtaagcactctaca 6466  T

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Target: scaffold0164; HSP #2
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 34 - 68
Target Start/End: Original strand, 14313 - 14347
Alignment:
Q  34 cattgcgattgtggcactggagtaagcactctaca 68  Q
    |||||||||||||||||||||||||||||||||||    
T  14313 cattgcgattgtggcactggagtaagcactctaca 14347  T

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Target: chr6 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 68
Target Start/End: Complemental strand, 8847824 - 8847763
Alignment:
Q  7 acaaagaacattcaggcagtcaattgacattgcgattgtggcactggagtaagcactctaca 68  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  8847824 acaaagaacattcaggcagtcaattggcattgcgattgtggcactggagtaagcactctaca 8847763  T

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Target: chr6; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 194
Target Start/End: Complemental strand, 8847683 - 8847632
Alignment:
Q  143 aaaccaagtaaaatatctcatgaataatttcaagttggtttgtttgtgatta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8847683 aaaccaagtaaaatatctcatgaataatttcaagttggtttgtttgtgatta 8847632  T

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Target: chr2 (Bit Score: 58; Significance: 1e-24; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 58; E-Value: 1e-24
Query Start/End: Original strand, 7 - 68
Target Start/End: Original strand, 24070120 - 24070181
Alignment:
Q  7 acaaagaacattcaggcagtcaattgacattgcgattgtggcactggagtaagcactctaca 68  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||    
T  24070120 acaaagaacattcaggcagtcaattggcattgcgattgtggcactggagtaagcactctaca 24070181  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 5e-21
Query Start/End: Original strand, 143 - 194
Target Start/End: Original strand, 24070256 - 24070307
Alignment:
Q  143 aaaccaagtaaaatatctcatgaataatttcaagttggtttgtttgtgatta 194  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  24070256 aaaccaagtaaaatatctcatgaataatttcaagttggtttgtttgtgatta 24070307  T

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