View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5822A-LTR4-TNT-insertion-3 (Length: 403)
Name: SO5822A-LTR4-TNT-insertion-3
Description: SO5822A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5822A-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr8 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 9 - 394
Target Start/End: Original strand, 10984615 - 10985000
Alignment:
| Q |
9 |
atgggtagtggggcccctttaatgttgatttgctcagttatttacttaattgataaatccaagggccgtaaatatttcgtgatgatttcgctggataatt |
108 |
Q |
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| T |
10984615 |
atgggtagtggggcccctttaatgttgatttgctcagttatttacttaattgataaatccaagggccgtaaatatttcgtgatgatttcgctggataatt |
10984714 |
T |
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| Q |
109 |
cctcaggatgaatagcatccctcaaataaaatagagaaaataatatttttagtaaagtaatttaatcaagtagtattgaggtattaatccttgttgtata |
208 |
Q |
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| T |
10984715 |
cctcaggatgaatagcatccctcaaataaaatagagaaaataatatttttagtaaagtaatttaatcaagtagtattgaggtattaatccttgttgtata |
10984814 |
T |
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| Q |
209 |
ctctaccccttcataaacaagccttctcaccctttgtagtgtctttgttgaaatcgtgttttctcctcctccgacgtgcatacatgaaatgacaatcgta |
308 |
Q |
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| T |
10984815 |
ctctaccccttcataaacaagtcttctcaccctttgtagtgtctttgttgaaatcgtgttttctcctcctccgacgtgcatacatgaaatgacaatcgta |
10984914 |
T |
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| Q |
309 |
ttttatttgttctagtttcatccattaaggtggctcttgttgaaggagaagttaggggccatgttgactttcaatccaaacaattg |
394 |
Q |
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| T |
10984915 |
ttttatttgttctagtttcatccattaaggtggctcttgttgaaggagaagttaggggccatgttgactttcaatccaaacaattg |
10985000 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 58 - 127
Target Start/End: Original strand, 28600699 - 28600768
Alignment:
| Q |
58 |
ttgataaatccaagggccgtaaatatttcgtgatgatttcgctggataattcctcaggatgaatagcatc |
127 |
Q |
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| T |
28600699 |
ttgatcaatccaaggaccgcaatgatttcgggatgatttcgctatattattcgtcaggatgaatagcatc |
28600768 |
T |
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