View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5822A-LTR4-TNT-insertion-4 (Length: 471)
Name: SO5822A-LTR4-TNT-insertion-4
Description: SO5822A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5822A-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr5 (Bit Score: 336; Significance: 0; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 336; E-Value: 0
Query Start/End: Original strand, 8 - 461
Target Start/End: Complemental strand, 32031937 - 32031483
Alignment:
| Q |
8 |
attgaagctgatattagattaccgcagtggatccaagaatagtaatactgnnnnnnnagggttccggtnnnnnnnnnnnntaggggaatgattgattata |
107 |
Q |
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| T |
32031937 |
attgaagctgatattagattaccgcagtggatccaagaatagtaatactgtttttttagggttccggtgagagagagagataggggaatgattgattata |
32031838 |
T |
|
| Q |
108 |
atatagaagaaccgtgtttttaagagatagtatccattgacttaagggttaagtaatagtttaattggttatgatattacacataccaacgaagactann |
207 |
Q |
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| T |
32031837 |
atatagaagaaccgtgtttttaagagatagtatccattgacttaagggttaagtaatagtttaattggttatgatattacacataccaacgaagactatt |
32031738 |
T |
|
| Q |
208 |
nnnnnnnn-aaccatatttttaaaagttctagccaaaacaagtagcttactatcataactatataaaaattgcatgtaaaaggatttcttactaagttgt |
306 |
Q |
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| T |
32031737 |
tttttttttaaccatatttttaaaagttctagccaaaacaagtagcttactatcataactatataaaaattgcatgtaaaaggatttcttactaagttgt |
32031638 |
T |
|
| Q |
307 |
tgagagttattatttcactttgtcgggnnnnnnnngtattatttctcaatcacttttcagagtttcatttcaattctaagtttactttttgttcaatttc |
406 |
Q |
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| T |
32031637 |
tgagagttattatttcactttgtcgggaaaaaaaagtattatttctcaatcacttttcagagtttcatttcaattctaagtttactttttgttcaatttc |
32031538 |
T |
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| Q |
407 |
acactcttaatttgaagaaaaatattttttcaatatattttgaaacaatatatta |
461 |
Q |
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| T |
32031537 |
acactcttaatttgaagaaaaatattttttcaatatattttgaaacaatatatta |
32031483 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 343 - 394
Target Start/End: Complemental strand, 32031152 - 32031101
Alignment:
| Q |
343 |
tattatttctcaatcacttttcagagtttcatttcaattctaagtttacttt |
394 |
Q |
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| T |
32031152 |
tattatttctcaatcacttttcagagtttcattttaattctaagtttacttt |
32031101 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 394 - 436
Target Start/End: Complemental strand, 31795185 - 31795143
Alignment:
| Q |
394 |
tttgttcaatttcacactcttaatttgaagaaaaatatttttt |
436 |
Q |
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| T |
31795185 |
tttgttcaatttcacacttttaatttgaagaaaaatatttttt |
31795143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 393 - 436
Target Start/End: Complemental strand, 31795024 - 31794981
Alignment:
| Q |
393 |
ttttgttcaatttcacactcttaatttgaagaaaaatatttttt |
436 |
Q |
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| T |
31795024 |
ttttgttcaatttcacactattaatttgaaggaaaatatttttt |
31794981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 394 - 460
Target Start/End: Complemental strand, 32031367 - 32031301
Alignment:
| Q |
394 |
tttgttcaatttcacactcttaatttgaagaaaaatattttttcaatatattttgaaacaatatatt |
460 |
Q |
| |
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| T |
32031367 |
tttgttcaattttacaattttaattttaagaaaagtttttcttcaatatattttgagacaatatatt |
32031301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 392 - 460
Target Start/End: Complemental strand, 31792796 - 31792728
Alignment:
| Q |
392 |
tttttgttcaatttcacactcttaatttgaagaaaaatattttttcaatatattttgaaacaatatatt |
460 |
Q |
| |
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|||||||||||||| ||||| ||||||| |||||| | ||| || |||||||||||| |||||||||| |
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| T |
31792796 |
tttttgttcaattttacacttttaattttaagaaatttttttctttaatatattttgagacaatatatt |
31792728 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 394 - 448
Target Start/End: Complemental strand, 31792988 - 31792933
Alignment:
| Q |
394 |
tttgttcaatttcacactcttaatttgaag-aaaaatattttttcaatatattttg |
448 |
Q |
| |
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|||||||||||||||||| ||||||||||| ||||| ||| |||||||||||||| |
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| T |
31792988 |
tttgttcaatttcacacttttaatttgaagtaaaaagttttgttcaatatattttg |
31792933 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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