View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5822A-LTR4-TNT-insertion-5 (Length: 385)
Name: SO5822A-LTR4-TNT-insertion-5
Description: SO5822A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5822A-LTR4-TNT-insertion-5 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 364; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 8 - 375
Target Start/End: Original strand, 31583933 - 31584300
Alignment:
| Q |
8 |
tttgcaagtttctttctgctaattgcttcaatgttcacatcgtcgcctgtataatcatgatttcaaacaaaactgatgtatctaactcttacaaacaaag |
107 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31583933 |
tttgcaagtttctttctgctaattgcttcaatgttcacatcgtcgcctgtataatcatgatttcaaacaaaactgatgtatctaactcttacaaacaaag |
31584032 |
T |
|
| Q |
108 |
ttaaacacagcacagaaataaagaatccattcaatttcaacttgtttgtgataaatgtgaagtactcatattactaactcgttaccacttgccatgagat |
207 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31584033 |
ttaaacacagcacagaaataaagaatccattcaatttcaacttgtttgtgataaatgtgaagtactcatattactaactcgttaccacttgccatgagat |
31584132 |
T |
|
| Q |
208 |
tgtaaatggtaagggaaaggcaaaatgataataaatgaattgcatctaccagagtatgtaacaaaagaacatagaaagtttacagatagaagatatcaga |
307 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31584133 |
tgtaaatggtaagggaaaggcaaaatgataataaatgaattgcatctatcagagtatgtaacaaaagaacatagaaagtttacagatagaagatatcaga |
31584232 |
T |
|
| Q |
308 |
gaaataatttacaaaagggaatagaaggcaacaatgtcatatatttacattaggattttgatgaatta |
375 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31584233 |
gaaataatttacaaaagggaatagaaggcaacaatgtcatatatttacattaggattttgatgaatta |
31584300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University