View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5823A-LTR4-TNT-insertion-1 (Length: 235)
Name: SO5823A-LTR4-TNT-insertion-1
Description: SO5823A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5823A-LTR4-TNT-insertion-1 |
 | |
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Alignment Details
Target: chr5 (Bit Score: 217; Significance: 1e-119; HSPs: 7)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 38180564 - 38180780
Alignment:
| Q |
9 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180564 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
38180663 |
T |
|
| Q |
109 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38180664 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
38180763 |
T |
|
| Q |
209 |
ataaagtatggtgaatt |
225 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38180764 |
ataaagtatggtgaatt |
38180780 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 38190567 - 38190351
Alignment:
| Q |
9 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190567 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
38190468 |
T |
|
| Q |
109 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38190467 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
38190368 |
T |
|
| Q |
209 |
ataaagtatggtgaatt |
225 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38190367 |
ataaagtatggtgaatt |
38190351 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 38207788 - 38208004
Alignment:
| Q |
9 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38207788 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
38207887 |
T |
|
| Q |
109 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38207888 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
38207987 |
T |
|
| Q |
209 |
ataaagtatggtgaatt |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38207988 |
ataaagtatggtgaatt |
38208004 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 38217792 - 38217576
Alignment:
| Q |
9 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38217792 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
38217693 |
T |
|
| Q |
109 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38217692 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
38217593 |
T |
|
| Q |
209 |
ataaagtatggtgaatt |
225 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
38217592 |
ataaagtatggtgaatt |
38217576 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 9 - 225
Target Start/End: Original strand, 38455924 - 38456140
Alignment:
| Q |
9 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38455924 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
38456023 |
T |
|
| Q |
109 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38456024 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
38456123 |
T |
|
| Q |
209 |
ataaagtatggtgaatt |
225 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38456124 |
ataaagtatggtgaatt |
38456140 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 9 - 225
Target Start/End: Complemental strand, 26033692 - 26033476
Alignment:
| Q |
9 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttg |
108 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||| |||||||||||||| |
|
|
| T |
26033692 |
catggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaccatggaaccagaaattggaacgaggtatcgaaaaatgccgggcttatacgttg |
26033593 |
T |
|
| Q |
109 |
cggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaatctaaagtttttgagttctat |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| || | |||||||||| ||||||| |
|
|
| T |
26033592 |
cggtaaaagttgtcgtctaagatggtataatcacctgcaaccagatgtgaaaaagggtccatttagtgaagaagaagaaacaaaagtttttgtgttctat |
26033493 |
T |
|
| Q |
209 |
ataaagtatggtgaatt |
225 |
Q |
| |
|
| ||||||||||||||| |
|
|
| T |
26033492 |
aaaaagtatggtgaatt |
26033476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 38447031 - 38447205
Alignment:
| Q |
10 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgc |
109 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || | || ||| || | | |
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|
| T |
38447031 |
atggtcaaaagaagaggatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattgggacgaggtatcaaagaacacaggacttgcacacttc |
38447130 |
T |
|
| Q |
110 |
ggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaa |
184 |
Q |
| |
|
|| | |||||| ||| | |||||||||||| ||||| ||| | ||| |||||||||||||||||| |||||||| |
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|
| T |
38447131 |
ggaagaagttgccgttttagatggtataataacctaagacctggtgtaaaaaagggtccatttagtaaagaagaa |
38447205 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 131; Significance: 4e-68; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 10 - 187
Target Start/End: Complemental strand, 53352099 - 53351917
Alignment:
| Q |
10 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaa-----cgaggtatcaaaaaatgcggggcttatac |
104 |
Q |
| |
|
||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||| |
|
|
| T |
53352099 |
atggtcaaaagaagaggatgaaatgttaaaagcatatgtggaaaaacatggaaccagaaattggaatggaacgaggtatcaagaaatgcggggcttatac |
53352000 |
T |
|
| Q |
105 |
gttgcggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaaaaa |
187 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | |||||||||||| ||||| || |||||||||||||||||| |
|
|
| T |
53351999 |
gttgcggtaaaagttgtcgtctaagatggtataatcaccttcgaccagatgtgaagaaggggccgtttagtgaagaagaaaaa |
53351917 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 38342328 - 38342502
Alignment:
| Q |
10 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgc |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| || |||| ||| || || |
|
|
| T |
38342328 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt |
38342427 |
T |
|
| Q |
110 |
ggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaa |
184 |
Q |
| |
|
|| || ||||| ||| | |||||||||||| |||| ||| ||| | | ||||||||||||||| |||||||| |
|
|
| T |
38342428 |
ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaa |
38342502 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 184
Target Start/End: Original strand, 38446521 - 38446695
Alignment:
| Q |
10 |
atggtcaaaagaagaagatgaaatattaaaagcatatgtggaaaaacatggaaccagaaattggaacgaggtatcaaaaaatgcggggcttatacgttgc |
109 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||| ||||||||||||||| |||||||||| ||||||||||| || |||| ||| || || |
|
|
| T |
38446521 |
atggtcaaaagaagaggatgaaatattaaaagcatatgttgaaaaacatggaaccggaaattggaaagaggtatcaaagaacacgggacttgcacactgt |
38446620 |
T |
|
| Q |
110 |
ggtaaaagttgtcgtctaagatggtataatcacctacaaccagatgtgaaaaagggtccatttagtgaagaagaa |
184 |
Q |
| |
|
|| || ||||| ||| | |||||||||||| |||| ||| ||| | | ||||||||||||||| |||||||| |
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|
| T |
38446621 |
ggaaacagttgccgttttagatggtataatactctacgacctgatttaagaaagggtccatttagcaaagaagaa |
38446695 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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