View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5823A-LTR4-TNT-insertion-7 (Length: 375)
Name: SO5823A-LTR4-TNT-insertion-7
Description: SO5823A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5823A-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 7)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 10 - 366
Target Start/End: Original strand, 7520293 - 7520649
Alignment:
| Q |
10 |
tggaacctttatgggagctatatagtctaagaagcaactcttgaaagaaaattgatgtcgacaagttagtggtgatgttccctgaaacaagacagtggtt |
109 |
Q |
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| T |
7520293 |
tggaacctttatgggagctatatagtctaagaagcaactcttgaaagaaaattgatgtcgacaagttagtggtgatgttccctgaaacaagacagtggtt |
7520392 |
T |
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| Q |
110 |
gttgaacaaatttggttcatttgacttgaccaattaggtgtgtttacgacagccatgccctcaaacatcgatgatacttttgatcttagatcgttaacga |
209 |
Q |
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| T |
7520393 |
gttgaacaaatttggttcatttgacttgaccaattaggtgtgtttacgacagccatgccctcaaacatcgatgatacttttgatcttagatcgttaacga |
7520492 |
T |
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| Q |
210 |
ggtagttggtgatgttaaatgggtccattggtttgatatcatatagtagggagatgaatactcttcacatatcaattttttggtgaaattggcgtaaaag |
309 |
Q |
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| T |
7520493 |
ggtagttggtgatgttaaatgggtccattggtttgatatcatatagtagggagatgaatactcttcacatatcaattttttggtgaaattggcgtaaaag |
7520592 |
T |
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| Q |
310 |
aattaaggactaaactcttcattgtcggatcattgcctcatgttgagtatccaattg |
366 |
Q |
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| T |
7520593 |
aattaaggactaaactcttcattgtcggatcattgcctcatgttgagtatccaattg |
7520649 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 107; E-Value: 1e-53
Query Start/End: Original strand, 120 - 361
Target Start/End: Complemental strand, 7435441 - 7435200
Alignment:
| Q |
120 |
tttggttcatttgacttgaccaattaggtgtgttt-acgacagccatgccctcaaacatcgatgatacttttgatcttagatcgttaacgaggtagttgg |
218 |
Q |
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| T |
7435441 |
tttgtttcatttgacgtgaccaatgaagtgtgttttacgacacccatgccctcggatattgatgatacttttgatattagattggtgaagaggcagttgg |
7435342 |
T |
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| Q |
219 |
tgatgttaaatgggtccattggtttgatatcatatagtagggagatgaatactcttcacatatcaattttttggtgaaattggcgtaaaagaattaagga |
318 |
Q |
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| T |
7435341 |
tgatgttaaatcggtccattggtttgatatcatatagtggggagacgaatacccttcacgtatcaa-ttttaggtgaaattggtgtaaaagaatcgtgga |
7435243 |
T |
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| Q |
319 |
ctaaactcttcattgtcggatcattgcctcatgttgagtatcc |
361 |
Q |
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| T |
7435242 |
ctaagctcttcattgttgggtcgttgcctcatgttaagtatcc |
7435200 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 120 - 361
Target Start/End: Complemental strand, 7524270 - 7524029
Alignment:
| Q |
120 |
tttggttcatttgacttgaccaattaggtgtgttt-acgacagccatgccctcaaacatcgatgatacttttgatcttagatcgttaacgaggtagttgg |
218 |
Q |
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| T |
7524270 |
tttgtttcatttgacgtgaccaatgaggtgtgttttacgacacccatgccctcggatattgatcatacttttgatattagattggtgaagaggcagttgg |
7524171 |
T |
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| Q |
219 |
tgatgttaaatgggtccattggtttgatatcatatagtagggagatgaatactcttcacatatcaattttttggtgaaattggcgtaaaagaattaagga |
318 |
Q |
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| T |
7524170 |
tgatgttaaatgggtccattggtttgatatcatatagcggagagacgaatactcttcacgtatcga-ttttaggtgaaattggtgtaaaagaatcttgga |
7524072 |
T |
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| Q |
319 |
ctaaactcttcattgtcggatcattgcctcatgttgagtatcc |
361 |
Q |
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| T |
7524071 |
ctaagctcttcattgttgggccattgcctcatgttaagtatcc |
7524029 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 7435617 - 7435526
Alignment:
| Q |
10 |
tggaacctttatgggagctatatagtctaagaagcaactcttgaaagaaaattgatgtcgacaagttagtggtgatgttccctgaaacaaga |
101 |
Q |
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| T |
7435617 |
tggaacccttatgggagatatatagtctaagaagcaactcttggaagaaacttgatgttgacatgtctatggtgatgtcccctgaaacaaga |
7435526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 10 - 101
Target Start/End: Complemental strand, 7524446 - 7524355
Alignment:
| Q |
10 |
tggaacctttatgggagctatatagtctaagaagcaactcttgaaagaaaattgatgtcgacaagttagtggtgatgttccctgaaacaaga |
101 |
Q |
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| T |
7524446 |
tggaacccttatgggaaatatatagcctaagaagcaactcttggaagaaacttgatgttgacacgtctatggtgatgtctcctgaaacaaga |
7524355 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 236 - 330
Target Start/End: Complemental strand, 7498994 - 7498901
Alignment:
| Q |
236 |
attggtttgatatcatatagtagggagatgaatactcttcacatatcaattttttggtgaaattggcgtaaaagaattaaggactaaactcttca |
330 |
Q |
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|||| ||| ||||||||| || | || |||| |||| |||||||||||||||| | |||||||| ||| ||||||| | ||||||||||||||| |
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| T |
7498994 |
attgctttaatatcatattgtggagaaatgactacttttcacatatcaattttg-gatgaaattgacgtgaaagaatcatggactaaactcttca |
7498901 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 19 - 52
Target Start/End: Complemental strand, 7429356 - 7429323
Alignment:
| Q |
19 |
tatgggagctatatagtctaagaagcaactcttg |
52 |
Q |
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| T |
7429356 |
tatgggagatatatagtctaagaagcaactcttg |
7429323 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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