View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5828A-LTR4-TNT-insertion-1 (Length: 527)
Name: SO5828A-LTR4-TNT-insertion-1
Description: SO5828A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5828A-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr7 (Bit Score: 509; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 509; E-Value: 0
Query Start/End: Original strand, 9 - 517
Target Start/End: Original strand, 29593781 - 29594289
Alignment:
| Q |
9 |
agcaggtaaccaccattgtttttcacttcaaagcattgccaacccacatttaattcccaacctccaatagttacaggacagaatcacgggtcttcccgat |
108 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29593781 |
agcaggtaaccaccattgtttttcacttcaaagcattgccaacccacatttaattcccaacctccaatagttacaggacagaatcacgggtcttcccgat |
29593880 |
T |
|
| Q |
109 |
ttagtacatgcagccactccatttgcaaaacatttcagcgcaataacataacaacaagcaatttgcagcaaccaattaactcagttctgcattgaaatac |
208 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29593881 |
ttagtacatgcagccactccatttgcaaaacatttcagcgcaataacataacaacaagcaatttgcagcaaccaattaactcagttctgcattgaaatac |
29593980 |
T |
|
| Q |
209 |
aaaaccggatcagattgttttcctcaataatttaatattacagaaacaaagaagaataacttaatacctttaaacttgacagtgatatccttgaattcct |
308 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29593981 |
aaaaccggatcagattgttttcctcaataatttaatattacagaaacaaagaagaataacttaatacctttaaacttgacagtgatatccttgaattcct |
29594080 |
T |
|
| Q |
309 |
cttaattttctgatgatttaatgtaaacgtgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggaca |
408 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29594081 |
cttaattttctgatgatttaatgtaaacgtgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggaca |
29594180 |
T |
|
| Q |
409 |
accttccattcctaagatttcaaggtttgggaggcaatgcaaatcatcagggagagaaagtactttcgggcaattcacaattaaaagtgtatttagacaa |
508 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
29594181 |
accttccattcctaagatttcaaggtttgggaggcaatgcaaatcatcagggagagaaagtactttcgggcaattcacaattaaaagtgtatttagacaa |
29594280 |
T |
|
| Q |
509 |
tgtgaatta |
517 |
Q |
| |
|
||||||||| |
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|
| T |
29594281 |
tgtgaatta |
29594289 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 260; E-Value: 1e-144
Query Start/End: Original strand, 15 - 508
Target Start/End: Complemental strand, 29752604 - 29752092
Alignment:
| Q |
15 |
taaccaccattgtttttcacttcaaagcattgccaacccacatttaattcccaacctccaatagttacaggacagaatcacgggtcttcccgatttagta |
114 |
Q |
| |
|
|||||| |||| | |||||||| |||||||||||||||||| ||||||||| | ||| ||| ||| ||| |||||||||||||||||| |||||||||| |
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| T |
29752604 |
taaccaacattctgtttcactttaaagcattgccaacccacttttaattccaagccttcaacagtaacaagacagaatcacgggtctttgcgatttagta |
29752505 |
T |
|
| Q |
115 |
catgcagccactccatttgcaaaacatttcagcgcaataacataacaacaagcaatttgcagcaaccaattaac--------------tcagttctgcat |
200 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||||||||||| |
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| T |
29752504 |
catgcagccactccatttgccaaacatttcagcgcaataacataacaacatgcaatatgcagcaaccaattaacagaaagttgttacctcagttctgcat |
29752405 |
T |
|
| Q |
201 |
tgaaatacaaaaccggatcagattgttttcctcaataatttaatattacagaaacaaagaagaataacttaatacctttaaacttgacagtgatatcctt |
300 |
Q |
| |
|
||||||||||||||| |||||| |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| |||||| ||| ||||||||| |
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|
| T |
29752404 |
tgaaatacaaaaccgaatcagaatgttttcctcaataattttatattacagaaacaaagaagagcaactta-taccttttaacttggcagcgatatcctt |
29752306 |
T |
|
| Q |
301 |
gaattcctcttaattttc------tgatgatttaatgtaaacgtgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttcta |
394 |
Q |
| |
|
| |||||||||||||||| |||||||||||||| ||| |||||||||||||| ||||||||||||||||||||||||| ||||||||||||| || |
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|
| T |
29752305 |
gcattcctcttaattttcatgttctgatgatttaatgttaacttgtttgatgtgtgaaatcttgggccaatcatgtcctacctttggctggtatctttta |
29752206 |
T |
|
| Q |
395 |
cataattcaggacaaccttccattcctaagatttcaaggtttgggaggcaatgcaaatcatcagggagagaaagtactttcgggcaattcacaattaaaa |
494 |
Q |
| |
|
||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||||||||| || |||| |||||||||||| |||| || |
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| T |
29752205 |
cataattcaggacaatctttcatttctaagcattcaaggtttgggaggcaatgcacatcatcagggagtgagagtagtttcgggcaatttgtaattgtaa |
29752106 |
T |
|
| Q |
495 |
gtgtatttagacaa |
508 |
Q |
| |
|
|||||||||||||| |
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|
| T |
29752105 |
gtgtatttagacaa |
29752092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 15 - 508
Target Start/End: Original strand, 29600685 - 29601202
Alignment:
| Q |
15 |
taaccaccattgtttttcacttcaaagcattgccaacccacatttaattcccaacctccaatagttacaggacagaatcacgggtcttcccgatttagta |
114 |
Q |
| |
|
|||||| |||| | ||||||||||||||||||||||||||| ||||||||| | ||| ||| ||| ||| |||||||||||||||||| |||||||||| |
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|
| T |
29600685 |
taaccaacattctgtttcacttcaaagcattgccaacccacttttaattccaagccttcaacagtaacaagacagaatcacgggtctttgcgatttagta |
29600784 |
T |
|
| Q |
115 |
catgcagccactccatttgcaaaacatttcagcgcaataacataacaac-----aagcaatttgcagcaaccaattaac--------------tcagttc |
195 |
Q |
| |
|
||| |||||||||||||||| |||||||||||||||||||||||||||| | ||||| ||||||||||||||||| ||||||| |
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|
| T |
29600785 |
cattcagccactccatttgccaaacatttcagcgcaataacataacaacgtaacatgcaatatgcagcaaccaattaacagaaagttgttacctcagttc |
29600884 |
T |
|
| Q |
196 |
tgcattgaaatacaaaaccggatcagattgttttcctcaataatttaatattacagaaacaaagaagaataacttaatacctttaaacttgacagtgata |
295 |
Q |
| |
|
|||||||||||||||||||| ||| || |||||||||||||||||| ||||||||||||||||||||| |||||| ||||||| ||||||||||||||| |
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|
| T |
29600885 |
tgcattgaaatacaaaaccgaatccgaatgttttcctcaataattttatattacagaaacaaagaagagcaactta-taccttttaacttgacagtgata |
29600983 |
T |
|
| Q |
296 |
tccttgaattcctcttaattttc------tgatgatttaatgtaaacgtgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatc |
389 |
Q |
| |
|
|||||| |||||||||||||||| |||||||||||||| ||| ||||||||||||| ||||||||||||||||||||||||| ||||||||||| |
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|
| T |
29600984 |
tccttgcattcctcttaattttcatgttctgatgatttaatgttaactcgtttgatgtgtgaaatcttgggccaatcatgtcctacctttggctggtatc |
29601083 |
T |
|
| Q |
390 |
ttctacataattcaggacaaccttccattcctaagatttcaaggtttgggaggcaatgcaaatcatcagggagagaaagtactttcgggcaattcacaat |
489 |
Q |
| |
|
|| ||||||||||||||||| ||| |||| ||||| ||||||||||||||||||||||| |||||||||||| ||||||| |||||||||||| ||| |
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|
| T |
29601084 |
ttttacataattcaggacaatctttcatttctaagcattcaaggtttgggaggcaatgcacatcatcagggagtgaaagtagtttcgggcaatttctaat |
29601183 |
T |
|
| Q |
490 |
taaaagtgtatttagacaa |
508 |
Q |
| |
|
| |||||||||||||||| |
|
|
| T |
29601184 |
tgtaagtgtatttagacaa |
29601202 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 56; Significance: 6e-23; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 340 - 483
Target Start/End: Complemental strand, 49342444 - 49342301
Alignment:
| Q |
340 |
tttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggacaaccttccattcctaagatttcaaggtttggg |
439 |
Q |
| |
|
||||||||||||||||||| |||||||| |||| || ||||| |||||||||||| |||||| |||||| |||| ||| ||| ||||||||||||| |
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|
| T |
49342444 |
tttgatgtgtgatatcttgtgccaatcacgtccaactcctggccggtatcttctacctaattctggacaatcttcaatttttaaactttcaaggtttgga |
49342345 |
T |
|
| Q |
440 |
aggcaatgcaaatcatcagggagagaaagtactttcgggcaatt |
483 |
Q |
| |
|
|||||||| ||||| || ||||| |||| | |||||||||||| |
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|
| T |
49342344 |
aggcaatgtaaatcttcggggagcgaaaacaatttcgggcaatt |
49342301 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 338 - 409
Target Start/End: Complemental strand, 49353867 - 49353796
Alignment:
| Q |
338 |
tgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggacaa |
409 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||| || || ||||||||||||||||||||||| |||||| |
|
|
| T |
49353867 |
tgtttgatgtgtgatatcttgtgccaatcatgtccgacttcaggctggtatcttctacataattctggacaa |
49353796 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 55; Significance: 2e-22; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 338 - 508
Target Start/End: Original strand, 32782393 - 32782563
Alignment:
| Q |
338 |
tgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggacaaccttccattcctaagatttcaaggtttg |
437 |
Q |
| |
|
||||||||||||||||||||| |||||||| |||| || ||| |||||||||||||||||||||||||||| | | ||| ||| |||||| |||| |
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|
| T |
32782393 |
tgtttgatgtgtgatatcttgtgccaatcacgtccaactcctgcctggtatcttctacataattcaggacaatcataaattgataaatcttcaagctttg |
32782492 |
T |
|
| Q |
438 |
ggaggcaatgcaaatcatcagggagagaaagtactttcgggcaattcacaattaaaagtgtatttagacaa |
508 |
Q |
| |
|
| ||||||| | ||||| ||||| ||||| | |||||||||||| ||||||| |||| |||| |||||| |
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|
| T |
32782493 |
gaaggcaatctatgtcatcggggagcgaaagcaatttcgggcaatttacaattacaagtttattgagacaa |
32782563 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 44; Significance: 8e-16; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 44; E-Value: 8e-16
Query Start/End: Original strand, 338 - 413
Target Start/End: Complemental strand, 35159383 - 35159308
Alignment:
| Q |
338 |
tgtttgatgtgtgatatcttgggccaatcatgtcctacctctggctggtatcttctacataattcaggacaacctt |
413 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||| || | || | |||||||||||| |||||||||||||||| |
|
|
| T |
35159383 |
tgtttgatgtgtgatatcttgggccaatcctgtccaacttttgtttcgtatcttctacacaattcaggacaacctt |
35159308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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