View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5828A-LTR4-TNT-insertion-2 (Length: 413)
Name: SO5828A-LTR4-TNT-insertion-2
Description: SO5828A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5828A-LTR4-TNT-insertion-2 |
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Alignment Details
Target: chr4 (Bit Score: 376; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 376; E-Value: 0
Query Start/End: Original strand, 7 - 403
Target Start/End: Complemental strand, 45317658 - 45317262
Alignment:
| Q |
7 |
aacgacttcctatcaacatacattctattagaagaataggtgtaaagaaaaatctacagtatgttagtctaataagacaaccagaattaagtaaaatttg |
106 |
Q |
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| T |
45317658 |
aacgacttcctatcaacatacattctattagaagaataggtgtaaagaaaaatctacagtatgttagtctaataagacaaccagaattaagtaaaatttg |
45317559 |
T |
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| Q |
107 |
tgtgctctgaggttgagtggatatatgaaacaaaacattaaccttaaaacatatctaatattggtaaatctgttagaaaagtacataggacttagagaat |
206 |
Q |
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| T |
45317558 |
tgtgctctgaggttgagtggatatatgaaacaaaacattaaccttaaaacatatctaatattggtaaatctgttagaaaagtacataggacttagagaat |
45317459 |
T |
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| Q |
207 |
caatcaaacaggacaataggacataagactaattataatgtgaaaattaaagagnnnnnnncgctgccatgttccatgattcaattccatgactaggaga |
306 |
Q |
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| T |
45317458 |
caatcaaacaggacaataggacataagactaattataatgtgaaaattaaagagaaaaaaacgctgccatgttccatgattcaattccatgactaggaga |
45317359 |
T |
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| Q |
307 |
tcattatcaattaactttgatttgagatataaaacaaatattattatctagggtgctagaaaaagcagatccatacatcaataattgattcagatta |
403 |
Q |
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| T |
45317358 |
tcattatcaattaactttgatttgagatataaaacaaatattattatctagggtgctagaaaaagcagatccatacatcaataattgattcagatta |
45317262 |
T |
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