View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5828A-LTR4-TNT-insertion-3 (Length: 103)
Name: SO5828A-LTR4-TNT-insertion-3
Description: SO5828A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5828A-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr4 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 18176443 - 18176511
Alignment:
| Q |
26 |
aggggccgttgtaccaggtgctaaagcgtgggtattttgtatccattgagcaaagactggttgtaattg |
94 |
Q |
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| T |
18176443 |
aggggccgttgtaccaggtgctaaagcgtgggtattttgtatccattgagcaaagactggttgtaattg |
18176511 |
T |
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Target: chr3 (Bit Score: 69; Significance: 2e-31; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 69; E-Value: 2e-31
Query Start/End: Original strand, 26 - 94
Target Start/End: Complemental strand, 13217651 - 13217583
Alignment:
| Q |
26 |
aggggccgttgtaccaggtgctaaagcgtgggtattttgtatccattgagcaaagactggttgtaattg |
94 |
Q |
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| T |
13217651 |
aggggccgttgtaccaggtgctaaagcgtgggtattttgtatccattgagcaaagactggttgtaattg |
13217583 |
T |
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Target: chr7 (Bit Score: 61; Significance: 1e-26; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 61; E-Value: 1e-26
Query Start/End: Original strand, 26 - 94
Target Start/End: Original strand, 18044719 - 18044787
Alignment:
| Q |
26 |
aggggccgttgtaccaggtgctaaagcgtgggtattttgtatccattgagcaaagactggttgtaattg |
94 |
Q |
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| T |
18044719 |
aggggccgttgtaccaggtgctaaagcgtgggtattttttatccattgagcaaagactgattgtaattg |
18044787 |
T |
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Target: chr7; HSP #2
Raw Score: 45; E-Value: 3e-17
Query Start/End: Original strand, 26 - 82
Target Start/End: Complemental strand, 8286693 - 8286637
Alignment:
| Q |
26 |
aggggccgttgtaccaggtgctaaagcgtgggtattttgtatccattgagcaaagac |
82 |
Q |
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| T |
8286693 |
aggggccgttgtaccaggtgctaaagcgtagttattttgtatccattgaacaaagac |
8286637 |
T |
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