View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5828A-LTR4-TNT-insertion-5 (Length: 692)
Name: SO5828A-LTR4-TNT-insertion-5
Description: SO5828A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5828A-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr4 (Bit Score: 364; Significance: 0; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 364; E-Value: 0
Query Start/End: Original strand, 319 - 682
Target Start/End: Complemental strand, 50419618 - 50419255
Alignment:
| Q |
319 |
tcatctcaggtttagaatataaaaggattacattattataaattgacaagtgcataaatattaaataccatgccatgaaaatttagtggaagtagagtgt |
418 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419618 |
tcatctcaggtttagaatataaaaggattacattattataaattgacaagtgcataaatattaaataccatgccatgaaaatttagtggaagtagagtgt |
50419519 |
T |
|
| Q |
419 |
gcatgttctgctttcactgacagtgttatagagccgtttctgtcttcattgaaagaatgcaaaatctgtgttgaagggcctgctaacacaatgataaaca |
518 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419518 |
gcatgttctgctttcactgacagtgttatagagccgtttctgtcttcattgaaagaatgcaaaatctgtgttgaagggcctgctaacacaatgataaaca |
50419419 |
T |
|
| Q |
519 |
taagtttcaagcaagaattatatgaaaatacttcaaaaaagagtgaaatgttattatctttttgtacctgaatgtatttcaacattgctaagtgcaaggg |
618 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
50419418 |
taagtttcaagcaagaattatatgaaaatacttcaaaaaagagtgaaatgttattatctttttgtacctgaatgtatttcaacattgctaagtgcaaggg |
50419319 |
T |
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| Q |
619 |
gggttatgaagcagaggaagaacagaggggtgtagttaatgatagtcatattagttgtggaatt |
682 |
Q |
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| T |
50419318 |
gggttatgaagcagaggaagaacagaggggtgtagttaatgatagtcatattagttgtggaatt |
50419255 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 280; E-Value: 1e-156
Query Start/End: Original strand, 9 - 292
Target Start/End: Complemental strand, 50419928 - 50419645
Alignment:
| Q |
9 |
taagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagacagtctcttgaacaatttagggttgattattc |
108 |
Q |
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| T |
50419928 |
taagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagatagtctcttgaacaatttagggttgattattc |
50419829 |
T |
|
| Q |
109 |
ttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcactacatacttagggattcc |
208 |
Q |
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| T |
50419828 |
ttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcactacatacttagggattcc |
50419729 |
T |
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| Q |
209 |
agttagagtctctctactttgtgaaatgcttatgtctttgtttgtgcaagaacctaatgaaaaccacacacatacacatattag |
292 |
Q |
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| T |
50419728 |
agttagagtctctctactttgtgaaatgcttatgtctttgtttgtgcaagaacctaatgaaaaccacacacatacacatattag |
50419645 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 2e-44; HSPs: 6)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 2e-44
Query Start/End: Original strand, 9 - 190
Target Start/End: Original strand, 13046036 - 13046214
Alignment:
| Q |
9 |
taagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagacagtctcttgaacaatttagggttgattattc |
108 |
Q |
| |
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|||||||||||||| || || |||| |||||||| || ||||||| |||||||||||||||| |||| ||||||||||||||||||||||||||||||| |
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| T |
13046036 |
taagtgaatctaataatctggttagaagttaaaggcttccctccatgcaccaaacaatcatcataagagagtctcttgaacaatttagggttgattattc |
13046135 |
T |
|
| Q |
109 |
ttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcacactcagaagaaacacaagtattgacaatttgcac |
190 |
Q |
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| T |
13046136 |
ttgcagaagcaaaccaaccacagtgaagatggatatcataaggagcacatcc---agaaacacaagtgttaacaatttgcac |
13046214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 9 - 136
Target Start/End: Complemental strand, 8997199 - 8997075
Alignment:
| Q |
9 |
taagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagacagtctcttgaacaatttagggttgattattc |
108 |
Q |
| |
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|||||||||||||| ||||| ||||| || ||||| || |||||||||||||||| | | || |||| |||||||| |||||| |||| ||| |||||| |
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| T |
8997199 |
taagtgaatctaataatttggctagaagt-aaaggcttccctccattcaccaaacgaac--cataagagagtctcttaaacaatctaggattgtttattc |
8997103 |
T |
|
| Q |
109 |
ttgcagaagcaaaccagccacagtgaag |
136 |
Q |
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|||||||||||||||| ||||||||||| |
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| T |
8997102 |
ttgcagaagcaaaccaaccacagtgaag |
8997075 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 9 - 157
Target Start/End: Complemental strand, 9013322 - 9013177
Alignment:
| Q |
9 |
taagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagacagtctcttgaacaatttagggttgattattc |
108 |
Q |
| |
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|||||||||||||| || || ||||| || ||||| || |||||||||||||||| | | || |||| |||||||| |||||| |||| ||| |||||| |
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| T |
9013322 |
taagtgaatctaataatctggctagaagt-aaaggcttccctccattcaccaaaccaac--cataagagagtctcttaaacaatctaggattgtttattc |
9013226 |
T |
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| Q |
109 |
ttgcagaagcaaaccagccacagtgaaggtgaatattatatggagcaca |
157 |
Q |
| |
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|||||||||||||||| ||||||||||| || |||| || |||||||| |
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| T |
9013225 |
ttgcagaagcaaaccaaccacagtgaagatggatatcattaggagcaca |
9013177 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 8979855 - 8979797
Alignment:
| Q |
78 |
agtctcttgaacaatttagggttgattattcttgcagaagcaaaccagccacagtgaag |
136 |
Q |
| |
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|||||||| |||||| |||| ||| |||||||||||||||||||||| ||||||||||| |
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| T |
8979855 |
agtctcttaaacaatctaggattgtttattcttgcagaagcaaaccaaccacagtgaag |
8979797 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 414 - 494
Target Start/End: Original strand, 13046540 - 13046620
Alignment:
| Q |
414 |
agtgtgcatgttctgctttcactgacagtgttatagagccgtttctgtcttcattgaaagaatgcaaaatctgtgttgaag |
494 |
Q |
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||||||||||||| |||| |||||| ||||| ||| || ||| ||||||||| ||||||||| |||||||||||||||| |
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| T |
13046540 |
agtgtgcatgttcaactttttctgacactgttagagaaccatttttgtcttcatggaaagaatgaaaaatctgtgttgaag |
13046620 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 9 - 92
Target Start/End: Complemental strand, 9030972 - 9030892
Alignment:
| Q |
9 |
taagtgaatctaatgatttgactagaggttaaaggttttcctccattcaccaaacaatcatcaaaagacagtctcttgaacaat |
92 |
Q |
| |
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|||||||||||||| ||||| ||||| || ||||| || |||||||||||||||| | | || |||| ||||||||||||||| |
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| T |
9030972 |
taagtgaatctaataatttggctagaagt-aaaggcttccctccattcaccaaacga--accataagagagtctcttgaacaat |
9030892 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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