View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5844A-LTR4-TNT-insertion-1 (Length: 101)
Name: SO5844A-LTR4-TNT-insertion-1
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5844A-LTR4-TNT-insertion-1 |
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Alignment Details
Target: chr8 (Bit Score: 84; Significance: 2e-40; HSPs: 5)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 84; E-Value: 2e-40
Query Start/End: Original strand, 8 - 91
Target Start/End: Original strand, 32635926 - 32636009
Alignment:
| Q |
8 |
acttggacaatagttcaggtgaaaggatctatataacaagtttcacaagatccaacttctaccacaagtcctgtgattttatta |
91 |
Q |
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| T |
32635926 |
acttggacaatagttcaggtgaaaggatctatataacaagtttcacaagatccaacttctaccacaagtcctgtgattttatta |
32636009 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 44; E-Value: 1e-16
Query Start/End: Original strand, 10 - 57
Target Start/End: Complemental strand, 6307784 - 6307737
Alignment:
| Q |
10 |
ttggacaatagttcaggtgaaaggatctatataacaagtttcacaaga |
57 |
Q |
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| T |
6307784 |
ttggacaatagttcaggtgaaagaatctatataacaagtttcacaaga |
6307737 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 43; E-Value: 5e-16
Query Start/End: Original strand, 8 - 54
Target Start/End: Original strand, 5648079 - 5648125
Alignment:
| Q |
8 |
acttggacaatagttcaggtgaaaggatctatataacaagtttcaca |
54 |
Q |
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| T |
5648079 |
acttggacaatagttcaggtgaaaggatctgtataacaagtttcaca |
5648125 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Complemental strand, 5604786 - 5604740
Alignment:
| Q |
6 |
caacttggacaatagttcaggtgaaaggatctatataacaagtttca |
52 |
Q |
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| T |
5604786 |
caacttggaaaatagttcaggtgaaagaatatgtataacaagtttca |
5604740 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.000000008
Query Start/End: Original strand, 6 - 52
Target Start/End: Original strand, 5630584 - 5630630
Alignment:
| Q |
6 |
caacttggacaatagttcaggtgaaaggatctatataacaagtttca |
52 |
Q |
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||||||||| ||||||||||||||||| || | |||||||||||||| |
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| T |
5630584 |
caacttggaaaatagttcaggtgaaagaatatgtataacaagtttca |
5630630 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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