View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5844A-LTR4-TNT-insertion-10 (Length: 443)

Name: SO5844A-LTR4-TNT-insertion-10
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5844A-LTR4-TNT-insertion-10
SO5844A-LTR4-TNT-insertion-10
[»] chr6 (10 HSPs)
chr6 (9-421)||(33705371-33705783)
chr6 (26-155)||(21281117-21281245)
chr6 (93-232)||(21246119-21246260)
chr6 (93-164)||(21185064-21185137)
chr6 (255-325)||(21312750-21312820)
chr6 (191-244)||(33709834-33709887)
chr6 (195-311)||(21185168-21185284)
chr6 (255-311)||(21221630-21221686)
chr6 (132-160)||(21251805-21251833)
chr6 (191-223)||(21259957-21259989)
[»] scaffold0060 (1 HSPs)
scaffold0060 (321-398)||(33138-33217)


Alignment Details
Target: chr6 (Bit Score: 409; Significance: 0; HSPs: 10)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 409; E-Value: 0
Query Start/End: Original strand, 9 - 421
Target Start/End: Original strand, 33705371 - 33705783
Alignment:
Q  9 ctttctctcgagcactatttttatctaaaatcaatgcaccaaaaagatactatcaatgatcagctttataaatgaaatggactgcacaatgagaatcatt 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33705371 ctttctctcgagcactatttttatctaaaatcaatgcaccaaaaagatactatcaatgatcagctttataaatgaaatggactgcacaatgagaatcatt 33705470  T
Q  109 gggtccgaacagttacttaaccaacatgtatacaagggtcttttataggaaaatctttgtgttggctgtttaagatcatccaatgtgggactatgataac 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33705471 gggtccgaacagttacttaaccaacatgtatacaagggtcttttataggaaaatctttgtgttggctgtttaagatcatccaatgtgggactatgataac 33705570  T
Q  209 caaactattttatatatattgttcttccttctgctcatgtatctagctattttatatgtcatgttgctgagaattttgatttgctattctttacaacttt 308  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33705571 caaactattttatatatattgttcttccttctgctcatgtatctagctattttatatgtcatgttgctgagaattttgatttgctattctttacaacttt 33705670  T
Q  309 gaaagtaatagaacctggaacatacaaaggaattggaagatccaaatatctcaacttcctcttaagaaacattcaattactccattctcaaggggctctt 408  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33705671 gaaagtaatagaacctggaacatacaaaggaattggaagatccaaatatctcaacttcctcttaagaaacattcaattactccattctcaaggggctctt 33705770  T
Q  409 ttcttcctgttaa 421  Q
    |||||||| ||||    
T  33705771 ttcttccttttaa 33705783  T

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Target: chr6; HSP #2
Raw Score: 74; E-Value: 9e-34
Query Start/End: Original strand, 26 - 155
Target Start/End: Original strand, 21281117 - 21281245
Alignment:
Q  26 tttttatctaaaatcaatgcaccaaaaagatactatcaatgatcagctttataaatgaaatggactgcacaatgagaatcattgggtccgaacagttact 125  Q
    ||||| |||||||| ||| |||||||| |||||||  |||||||| ||||||||||||| ||||||||||||||||||||||||||||| ||||||||||    
T  21281117 tttttttctaaaattaattcaccaaaa-gatactactaatgatcatctttataaatgaagtggactgcacaatgagaatcattgggtccaaacagttact 21281215  T
Q  126 taaccaacatgtatacaagggtcttttata 155  Q
    |   |||||||||||||| |||||||||||    
T  21281216 ttgtcaacatgtatacaaaggtcttttata 21281245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 21246260 - 21246119
Alignment:
Q  93 cacaatgagaatcattgggtccgaacagtta--cttaaccaacatgtatacaagggtcttttataggaaaatctttgtgttggctgtttaagatcatcca 190  Q
    ||||||| |||| |||||||||||| |||||  ||  | |||||||||||||||| | |||| |||| |||||||  | || | ||||||||| | ||||    
T  21246260 cacaatgtgaattattgggtccgaatagttatactccagcaacatgtatacaaggatattttgtaggtaaatcttcctcttagttgtttaagaacctcca 21246161  T
Q  191 atgtgggactatgataaccaaactattttatatatattgttc 232  Q
    |||||||||||| |||||||||||||||||||| | ||||||    
T  21246160 atgtgggactatcataaccaaactattttatatgtcttgttc 21246119  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 93 - 164
Target Start/End: Original strand, 21185064 - 21185137
Alignment:
Q  93 cacaatgagaatcattgggtccgaacagtta--cttaaccaacatgtatacaagggtcttttataggaaaatct 164  Q
    ||||||| |||| ||||||||||||| ||||  |||   ||||||| |||||||||||||||||||| ||||||    
T  21185064 cacaatgcgaattattgggtccgaactgttatacttcggcaacatgcatacaagggtcttttataggtaaatct 21185137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 325
Target Start/End: Original strand, 21312750 - 21312820
Alignment:
Q  255 ctattttatatgtcatgttgctgagaattttgatttgctattctttacaactttgaaagtaatagaacctg 325  Q
    |||||||||||||||||||||||||||||   || ||||  ||||||||| || |||| ||| ||||||||    
T  21312750 ctattttatatgtcatgttgctgagaattggtatatgcttgtctttacaaattagaaaataacagaacctg 21312820  T

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Target: chr6; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 191 - 244
Target Start/End: Original strand, 33709834 - 33709887
Alignment:
Q  191 atgtgggactatgataaccaaactattttatatatattgttcttccttctgctc 244  Q
    |||||||||||| | ||| |||||||||||||| | ||||||||||| ||||||    
T  33709834 atgtgggactattaaaacaaaactattttatatgttttgttcttcctcctgctc 33709887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 195 - 311
Target Start/End: Original strand, 21185168 - 21185284
Alignment:
Q  195 gggactatgataaccaaactattttatatatattgttcttccttctgctcatgtatctagctattttatatgtcatgttgctgagaattttgatttgcta 294  Q
    |||||||| |||| |||||||||||| || | ||||||| | | || ||||| | ||| | | ||||||||||| || ||||||||||||  || |  ||    
T  21185168 gggactatcataatcaaactattttaaatgtcttgttctccatcctcctcatatttcttgttgttttatatgtcttggtgctgagaatttgtatatatta 21185267  T
Q  295 ttctttacaactttgaa 311  Q
    ||||||| |||||||||    
T  21185268 ttctttaaaactttgaa 21185284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 255 - 311
Target Start/End: Original strand, 21221630 - 21221686
Alignment:
Q  255 ctattttatatgtcatgttgctgagaattttgatttgctattctttacaactttgaa 311  Q
    ||||||||||| || || | ||||||||||  || ||||||||||||||||||||||    
T  21221630 ctattttatatatcttgatactgagaatttgtatatgctattctttacaactttgaa 21221686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 132 - 160
Target Start/End: Complemental strand, 21251833 - 21251805
Alignment:
Q  132 acatgtatacaagggtcttttataggaaa 160  Q
    |||||||||||||||||||||||||||||    
T  21251833 acatgtatacaagggtcttttataggaaa 21251805  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 191 - 223
Target Start/End: Original strand, 21259957 - 21259989
Alignment:
Q  191 atgtgggactatgataaccaaactattttatat 223  Q
    |||||||||||| ||||||||||||||||||||    
T  21259957 atgtgggactatcataaccaaactattttatat 21259989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0060 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 1)
Name: scaffold0060
Description:

Target: scaffold0060; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 321 - 398
Target Start/End: Complemental strand, 33217 - 33138
Alignment:
Q  321 acctggaacatacaaaggaattggaagatccaaa--tatctcaacttcctcttaagaaacattcaattactccattctca 398  Q
    ||||| |||||||||||| | ||||||||| |||  || ||||||||||||||||||| |||||||| ||||||||||||    
T  33217 acctgaaacatacaaaggtaatggaagatctaaagttacctcaacttcctcttaagaaccattcaatcactccattctca 33138  T

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