View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5844A-LTR4-TNT-insertion-4 (Length: 236)
Name: SO5844A-LTR4-TNT-insertion-4
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5844A-LTR4-TNT-insertion-4 |
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Alignment Details
Target: chr4 (Bit Score: 215; Significance: 1e-118; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 215; E-Value: 1e-118
Query Start/End: Original strand, 9 - 227
Target Start/End: Complemental strand, 3041937 - 3041719
Alignment:
| Q |
9 |
ctaaccctctcctttggtactataatttattgcaaagggacccctcaatcaagcaaatcacatggcatgttccacaagtcatctaatcaaacggccaaga |
108 |
Q |
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| T |
3041937 |
ctaaccctctcctttggtactataatttattgcaaagagacccctcaatcaagcaaatcacatggcatgttccacaagtcatctaatcaaacggccaaga |
3041838 |
T |
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| Q |
109 |
tcaaatcttaaaatatcacaaggaagcataaatcgttcgatatgtcccatatccaacttattatggtgctggcttctgttgggggttttgggaggagaca |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
3041837 |
tcaaatcttaaaatatcacaaggaagcataaatcgttcgatatgtcccatatccaacttattatggtgctggcttctgttgggggttttgggaggagaca |
3041738 |
T |
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| Q |
209 |
acttttgtccccacaattg |
227 |
Q |
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||||||||||||||||||| |
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| T |
3041737 |
acttttgtccccacaattg |
3041719 |
T |
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