View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5844A-LTR4-TNT-insertion-5 (Length: 395)
Name: SO5844A-LTR4-TNT-insertion-5
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5844A-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr2 (Bit Score: 329; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 8 - 387
Target Start/End: Complemental strand, 11112086 - 11111707
Alignment:
| Q |
8 |
gtttcaataatcaagaattatttttcttgtcnnnnnnnnntcaagaattagttttaggcatcaaaattcaactttcaataattgtagttcatatttaagt |
107 |
Q |
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| T |
11112086 |
gtttcaataatcaagaattatttttcttgtcaaaaaaaaatcaagaattagttttaggcatcaaaattcaactttcaataattgtagttcatatttaagt |
11111987 |
T |
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| Q |
108 |
acataagtggttttatcaaaatataagagtgaagtatattttgtacttcatttctaaattttcatttagtactacttgtagttgtacttattcatctttg |
207 |
Q |
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| T |
11111986 |
acataagtggttttatcaaaatataagagtgaagtatattttgtacttcatttctaaattttcatttagtactacttgtagttgtacttattcatctttg |
11111887 |
T |
|
| Q |
208 |
ttataataattttctctttgttgttnnnnnnnncacagaaagagcttgtgacagaaagaaaggattttataatgaaaattacattgaaagaaggttatct |
307 |
Q |
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| T |
11111886 |
ttataataattttctctttgttgttaaaaaaaacacagaaagagcttgtgacagaaagaaaggattttataatgaaaattacattgaaagaaggttatct |
11111787 |
T |
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| Q |
308 |
tacacacataaaacacgtaaaatacagtatacctcatgacacaaatgtgcttagccagcacttctctttattagtgaatt |
387 |
Q |
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| T |
11111786 |
tacacacataaaacacgtaaaatacagtatacctcatgacacaaatgtgcttagccagcacttctctttattagtgaatt |
11111707 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 54 - 123
Target Start/End: Original strand, 33451630 - 33451699
Alignment:
| Q |
54 |
attagttttaggcatcaaaattcaactttcaataattgtagttcatatttaagtacataagtggttttat |
123 |
Q |
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| T |
33451630 |
attatttttaggtatcaaaattcaactttcaataattgtagttcatatttaagtacataagtggttttat |
33451699 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 48 - 128
Target Start/End: Original strand, 24532484 - 24532564
Alignment:
| Q |
48 |
tcaagaattagttttaggcatcaaaattcaactttcaataattgtagttcatatttaagtacataagtggttttatcaaaa |
128 |
Q |
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||||||||| ||||||| || |||||| ||||||||||||||||| ||||||||||||||||||||||| ||||||||| |
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| T |
24532484 |
tcaagaattttttttaggtattaaaattgaactttcaataattgtaattcatatttaagtacataagtggcattatcaaaa |
24532564 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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