View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5844A-LTR4-TNT-insertion-6 (Length: 808)
Name: SO5844A-LTR4-TNT-insertion-6
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5844A-LTR4-TNT-insertion-6 |
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| [»] chr1 (6 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 749; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 749; E-Value: 0
Query Start/End: Original strand, 9 - 808
Target Start/End: Original strand, 1382027 - 1382826
Alignment:
| Q |
9 |
gcgcaagcatgaataatatataatagtttcttcttattcacaaaacccaaaactaatgnnnnnnnnttaatttacttgttttaacatcaaataaagccaa |
108 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
1382027 |
gcgcaagcatgaataatatataatagtttcttcttattcacaaaacccaaaactaatgaaaaaaaattaatttacttgttttaacatcaaataaagccaa |
1382126 |
T |
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| Q |
109 |
tttgttagaagcgttaaatataaacatttccttaataaaagtgctgtctcttgtgcatcaaactaaataaaatacttctactttgctaaatctactgtac |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1382127 |
tttgttagaagcgttaaatataaacatttccttaataaaagtgctgtctcttgtgcatcaaactaaataaaatacttctactttgctaaatctactgtac |
1382226 |
T |
|
| Q |
209 |
aaagcaagcagcaaatcttatgatatttctacatctacataggtaacacttggcaaacaggcaaaatggaactagatgttactagtctacaacttttaat |
308 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1382227 |
aaagcaagcagcaaatcttatgatatttctacatctacataggtaacacttggcaaacaggcaaaatggaactagatgttactagtctacaacttttaat |
1382326 |
T |
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| Q |
309 |
acacaccaaacataaaataaaacttctaatttgtcctcttctaacagtaagatattcaacattttctggacaagggagaagagaaaccttatgtttttct |
408 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1382327 |
acacaccaaacataaaataaaacttctaatttgtcctcttctaacagtaagatattcaacattttctggacaagggagaagagaaaccttatgtttttct |
1382426 |
T |
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| Q |
409 |
ttttgcataaagcaactctgctgcagtgtgtccgcaatagaatatttggtagacaggtcaatctatacaaaatnnnnnnnnnttatattgtgaataacat |
508 |
Q |
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| T |
1382427 |
ttttgcataaagcaactctgctgcagtgtgtccgcaatagaatatttggtagacaggtcaatctatacaaaataaaaaaaaattatattgtgaataacat |
1382526 |
T |
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| Q |
509 |
gagtcaagcaggagatttgaagcaattaaggttgtaccttcacaggattccttaaacagacgcttagcatcgtatggacctgaaatcacacgaatattta |
608 |
Q |
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| T |
1382527 |
gagtcaagcaggagatttgaagcaattaaggttgtaccttcacaggattccttaaacagacgcttagcatcgtatggacctgaaatcacacgaatattta |
1382626 |
T |
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| Q |
609 |
gagaacttttatgagattttgttacaaaacctacatatttacctcctttgtgaatgtagatgaaaaaagaaatgttctccgctcactaggaatcattgtc |
708 |
Q |
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| T |
1382627 |
gagaacttttatgagattttgttacaaaacctacatatttacctcctttgtgaatgtagatgaaaaaagaaatgttctccgctcactaggaatcattgtc |
1382726 |
T |
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| Q |
709 |
gaaatctctaaaatatcacgtagatagcaggtgtgcatcatctatgacctgcgagcagagcagtgaaagtaaagacaagatatatgaaatatttgatttt |
808 |
Q |
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| T |
1382727 |
gaaatctctaaaatatcacgtagatagcaggtgtgcatcatctatgacctgcgagcagagcagtgaaagtaaagacaagatatatgaaatatttgatttt |
1382826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 300 - 530
Target Start/End: Original strand, 7316963 - 7317197
Alignment:
| Q |
300 |
acttttaatacacaccaaacataaaataaaacttctaatttgtcctcttctaacagtaagatattcaacattttctggacaagggagaagagaaacctta |
399 |
Q |
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| T |
7316963 |
acttttaatacacaccaaacatcaaacaaaacttctaatttgtcctgttctaacagtaagatattcaacattttctggacaagggagaagataaacctta |
7317062 |
T |
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| Q |
400 |
tgtttttctt---tttgcataaagcaactctgctgcagtgtgtccgcaatagaatatttggtagacaggtcaatctatacaaaatnnnnnnnnnt-tata |
495 |
Q |
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| T |
7317063 |
tgattttcttgcataaatttaaagcaactctgctgcagtgtgtccgcaatagaatatttggaagataggtcaatctatacagaataaaaatatatatata |
7317162 |
T |
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| Q |
496 |
ttgtgaataacatgagtcaagcaggagatttgaag |
530 |
Q |
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| T |
7317163 |
ttgtgaataacatgagtcaagcaggagatttgaag |
7317197 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 7e-42
Query Start/End: Original strand, 9 - 147
Target Start/End: Original strand, 7315546 - 7315685
Alignment:
| Q |
9 |
gcgcaagcatgaataatatataatagtttcttcttattcacaaaacccaaaactaatg-nnnnnnnnttaatttacttgttttaacatcaaataaagcca |
107 |
Q |
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| T |
7315546 |
gcgcaagcatgaataatatataatagtttcttcttattcacaaaacccaaaactaatgaaaaaaaaattaatttacttgttttaacaccaaatatagcca |
7315645 |
T |
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| Q |
108 |
atttgttagaagcgttaaatataaacatttccttaataaa |
147 |
Q |
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| T |
7315646 |
atttgttagaagcgttcaacacaaacatttccttaataaa |
7315685 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 36; E-Value: 0.00000000008
Query Start/End: Original strand, 168 - 207
Target Start/End: Original strand, 7316787 - 7316826
Alignment:
| Q |
168 |
aaactaaataaaatacttctactttgctaaatctactgta |
207 |
Q |
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| T |
7316787 |
aaactaaataaaatacttctactttgctaactctactgta |
7316826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 533 - 598
Target Start/End: Original strand, 7039563 - 7039628
Alignment:
| Q |
533 |
attaaggttgtaccttcacaggattccttaaacagacgcttagcatcgtatggacctgaaatcaca |
598 |
Q |
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| T |
7039563 |
attacggttgtaccttcacaggattccttaaaaacacactttggatcatatcgacctgaaatcaca |
7039628 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 249 - 283
Target Start/End: Original strand, 7316927 - 7316961
Alignment:
| Q |
249 |
aggtaacacttggcaaacaggcaaaatggaactag |
283 |
Q |
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| T |
7316927 |
aggtaacacttggcaaacaggaaaaatggaactag |
7316961 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 48; Significance: 5e-18; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 48; E-Value: 5e-18
Query Start/End: Original strand, 635 - 706
Target Start/End: Original strand, 29380921 - 29380992
Alignment:
| Q |
635 |
aaacctacatatttacctcctttgtgaatgtagatgaaaaaagaaatgttctccgctcactaggaatcattg |
706 |
Q |
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| T |
29380921 |
aaacctacatatttaccttctctgtcattgtagatgaaaaaagaaaagttctccgctcactaggaattattg |
29380992 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 236 - 281
Target Start/End: Original strand, 29378928 - 29378973
Alignment:
| Q |
236 |
tctacatctacataggtaacacttggcaaacaggcaaaatggaact |
281 |
Q |
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| T |
29378928 |
tctacatctacataggtaacacttggaacagaggcaaactggaact |
29378973 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 533 - 566
Target Start/End: Original strand, 20521784 - 20521817
Alignment:
| Q |
533 |
attaaggttgtaccttcacaggattccttaaaca |
566 |
Q |
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| T |
20521784 |
attatggttgtaccttcacaggattccttaaaca |
20521817 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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