View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5844A-LTR4-TNT-insertion-8 (Length: 316)
Name: SO5844A-LTR4-TNT-insertion-8
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5844A-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 176; Significance: 8e-95; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 176; E-Value: 8e-95
Query Start/End: Original strand, 8 - 183
Target Start/End: Complemental strand, 53661311 - 53661136
Alignment:
| Q |
8 |
tgatgtttctgaagggatgaaatatttgcatcagaatgatatcatacaccgggacctcaagtcagctaatcttttgatagataagactggagtaagctca |
107 |
Q |
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| T |
53661311 |
tgatgtttctgaagggatgaaatatttgcatcagaatgatatcatacaccgggacctcaagtcagctaatcttttgatagataagactggagtaagctca |
53661212 |
T |
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| Q |
108 |
cattgattacttttaaattttactggcttattgtattttagttgatgctgtcggtttatatttgtcaatggaattc |
183 |
Q |
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| T |
53661211 |
cattgattacttttaaattttactggcttattgtattttagttgatgctgtcggtttatatttgtcaatggaattc |
53661136 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 114; Significance: 8e-58; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 11460050 - 11459937
Alignment:
| Q |
178 |
gaattctgctaagtgtttttggatagttttcgtattttagtgaaacagcaagggataggcaatgttagactacaccaatagtttaacaaagagattagca |
277 |
Q |
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| T |
11460050 |
gaattctgctaagtgtttttggatagttttcgtattttagtgaaacagcaagggataggcaatgttagactacaccaatagtttaacaaagagattagca |
11459951 |
T |
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| Q |
278 |
ctcaacaccaattg |
291 |
Q |
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| T |
11459950 |
ctcaacaccaattg |
11459937 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 114; E-Value: 8e-58
Query Start/End: Original strand, 178 - 291
Target Start/End: Complemental strand, 11465032 - 11464919
Alignment:
| Q |
178 |
gaattctgctaagtgtttttggatagttttcgtattttagtgaaacagcaagggataggcaatgttagactacaccaatagtttaacaaagagattagca |
277 |
Q |
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| T |
11465032 |
gaattctgctaagtgtttttggatagttttcgtattttagtgaaacagcaagggataggcaatgttagactacaccaatagtttaacaaagagattagca |
11464933 |
T |
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| Q |
278 |
ctcaacaccaattg |
291 |
Q |
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|||||||||||||| |
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| T |
11464932 |
ctcaacaccaattg |
11464919 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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