View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5844A-LTR4-TNT-insertion-9 (Length: 551)
Name: SO5844A-LTR4-TNT-insertion-9
Description: SO5844A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5844A-LTR4-TNT-insertion-9 |
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Alignment Details
Target: chr6 (Bit Score: 488; Significance: 0; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 488; E-Value: 0
Query Start/End: Original strand, 50 - 541
Target Start/End: Complemental strand, 1331796 - 1331305
Alignment:
| Q |
50 |
ggaaatttaacagataacttcaaataaatatattcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaataatttttacaat |
149 |
Q |
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| T |
1331796 |
ggaaatttaacagataacttcaaataaatatattcaaaagagttttaaactttagagtttgatagatatacaatgatatagcataaataatttttacaat |
1331697 |
T |
|
| Q |
150 |
gagaaaaacatgagaaaacatgacttgatcctagaggattccgcctttaggaaacaagatttgaccctctctgtgatgttggaatgccatcatatgataa |
249 |
Q |
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| T |
1331696 |
gagaaaaacatgagaaaacatgacttgatcctagaggattccgcctttaggaaacaagatttgaccctctctgtgatgttggaatgccatcatatgataa |
1331597 |
T |
|
| Q |
250 |
cgttcatagctaagttgaaaaaacatgagaaaaacacatattagatacatagacatgaaataacttaagaccaccacatgtaatgtcaaataaattacct |
349 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
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| T |
1331596 |
cgttcatagctaagttgaaaaaacatgagaaaaacacatattagatacatagacatgaaataacttaagaccaccacatgtaatgtcaaataaattactt |
1331497 |
T |
|
| Q |
350 |
tggttccagtaaataaccaattctgtaattcccaacagacataggctaacaaaaaagcacaactcatcgtgtcgtggactacattggactggctcattat |
449 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
1331496 |
tggttccagtaaataaccaattctgtaattcccaacagacataggctaacaaaaaagcacaactcatcgtgtcgtggactacattggactggctcattat |
1331397 |
T |
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| Q |
450 |
cttttagacttcttaggattgattcattatcttagacatttcataattggataagcaagaaacaaaattacgttattttcatcacatgaatt |
541 |
Q |
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| T |
1331396 |
cttttagacttcttaggattgattcattatcttagacatttcataattggataagcaagaaacaaaattacgttattttcatcacatgaatt |
1331305 |
T |
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