View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5860A-LTR4-TNT-insertion-1 (Length: 633)

Name: SO5860A-LTR4-TNT-insertion-1
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5860A-LTR4-TNT-insertion-1
SO5860A-LTR4-TNT-insertion-1
[»] chr7 (9 HSPs)
chr7 (8-624)||(3649222-3649838)
chr7 (25-410)||(3657350-3657741)
chr7 (188-405)||(3646953-3647170)
chr7 (166-348)||(3641111-3641293)
chr7 (301-403)||(3648192-3648293)
chr7 (341-404)||(3656184-3656247)
chr7 (101-146)||(3653433-3653478)
chr7 (330-390)||(3638935-3638994)
chr7 (176-240)||(3655934-3655998)
[»] chr8 (5 HSPs)
chr8 (258-410)||(31555084-31555236)
chr8 (258-405)||(31878233-31878380)
chr8 (253-388)||(31558191-31558326)
chr8 (270-315)||(13568429-13568474)
chr8 (289-362)||(4042202-4042275)
[»] chr5 (14 HSPs)
chr5 (259-406)||(10109299-10109446)
chr5 (228-405)||(10105855-10106032)
chr5 (262-405)||(10102805-10102948)
chr5 (258-400)||(10209698-10209840)
chr5 (270-405)||(10212244-10212379)
chr5 (271-405)||(9660199-9660333)
chr5 (272-405)||(13856027-13856160)
chr5 (273-382)||(12109332-12109442)
chr5 (270-325)||(9674762-9674817)
chr5 (331-405)||(9674066-9674141)
chr5 (270-313)||(12104608-12104651)
chr5 (270-316)||(37278735-37278781)
chr5 (264-320)||(10215928-10215984)
chr5 (289-320)||(3467667-3467698)
[»] chr1 (11 HSPs)
chr1 (260-404)||(45316372-45316516)
chr1 (167-405)||(42409504-42409740)
chr1 (257-396)||(45151989-45152128)
chr1 (261-391)||(42202363-42202493)
chr1 (261-391)||(42211231-42211361)
chr1 (261-391)||(2176290-2176420)
chr1 (261-362)||(10542392-10542493)
chr1 (258-396)||(43014295-43014433)
chr1 (270-386)||(51795026-51795142)
chr1 (261-320)||(42417641-42417700)
chr1 (270-351)||(42217246-42217327)
[»] chr3 (2 HSPs)
chr3 (271-396)||(46446224-46446349)
chr3 (253-404)||(21884017-21884168)
[»] chr4 (6 HSPs)
chr4 (261-372)||(25698808-25698919)
chr4 (261-410)||(17889422-17889571)
chr4 (265-357)||(46362507-46362599)
chr4 (285-324)||(36790859-36790898)
chr4 (285-324)||(49588195-49588234)
chr4 (276-315)||(20918686-20918725)
[»] chr2 (3 HSPs)
chr2 (269-409)||(26568346-26568486)
chr2 (285-405)||(5900549-5900668)
chr2 (288-324)||(43633444-43633480)
[»] chr6 (1 HSPs)
chr6 (281-324)||(33891612-33891655)
[»] scaffold0287 (1 HSPs)
scaffold0287 (330-390)||(7091-7150)


Alignment Details
Target: chr7 (Bit Score: 545; Significance: 0; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 545; E-Value: 0
Query Start/End: Original strand, 8 - 624
Target Start/End: Original strand, 3649222 - 3649838
Alignment:
Q  8 cttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataaccactactacgcgttgatcctcca 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649222 cttaagtggcaatagaactgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataaccactactacgcgttgatcctcca 3649321  T
Q  108 ccagcacttcttcgagagtagattgaaatagttctacataaagtgatttgatgtctaattgtctatgttctgacttaagtcccacattggctagcgcata 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649322 ccagcacttcttcgagagtagattgaaatagttctacataaagtgatttgatgtctaattgtctatgttctgacttaagtcccacattggctagcgcata 3649421  T
Q  208 agtgaaactaagctgctcatatataaaaggaaaacatctcttcaatttataatcacggagttgtgtgatgatgacatagcgaactattctttcgcctttt 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649422 agtgaaactaagctgctcatatataaaaggaaaacatctcttcaatttataatcacggagttgtgtgatgatgacatagcgaactattctttcgcctttt 3649521  T
Q  308 actaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaattttttat 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649522 actaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaattttttat 3649621  T
Q  408 tttgaaatttgaattttcaagatattgagaggtcttcaatattaattcaattcannnnnnnnnnnnnnnnnnnnnnnngaagggtctgtaagtttaagtt 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||                        ||||||||||||||||||||||    
T  3649622 tttgaaatttgaattttcaagatattgagaggtcttcaatattaattcaattcattttcttttttctgttcttcttttgaagggtctgtaagtttaagtt 3649721  T
Q  508 tctctcggatcaaacaatctaataaacaaacaaattttagttgatagtttgttagattactattttacttctttgtttggtttgaaacttcaagaaatta 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3649722 tctctcggatcaaacaatctaataaacaaacaaattttagttgatagtttgttagattactattttacttctttgtttggtttgaaacttcaagaaatta 3649821  T
Q  608 atcgtgccagtcaattg 624  Q
    |||||||||||||||||    
T  3649822 atcgtgccagtcaattg 3649838  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 138; E-Value: 8e-72
Query Start/End: Original strand, 25 - 410
Target Start/End: Original strand, 3657350 - 3657741
Alignment:
Q  25 ctgagagcagaagcttctcatgatgtacctgaaactgatctttcactcaatctccataaccactactacgcgttgatcct----------ccaccagcac 114  Q
    |||||| |||||||||||||||||||||||||||||| ||||||| |||||||||||||||||| |||||||||||||||          ||||||||||    
T  3657350 ctgagaacagaagcttctcatgatgtacctgaaactgctctttcagtcaatctccataaccactgctacgcgttgatccttcaccgtcctccaccagcac 3657449  T
Q  115 ttcttcgagagtagattgaaatagttctacataaagtgatttgatgtctaattgtctatgttctgacttaagtcccacattggctagcgcataagtgaaa 214  Q
    ||||||||| |||||  ||||  |    |  | |||||||| | ||||||| |||||||||||||||| ||||||||||| || ||| |||   ||||||    
T  3657450 ttcttcgagggtagaaagaaagggagggag-tcaagtgattgggtgtctaactgtctatgttctgactaaagtcccacatcgggtagtgcac--gtgaaa 3657546  T
Q  215 ctaagctgctcatatataaaaggaaaacatctcttcaatttataatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaag 314  Q
    |||||||||| | |||||||  ||||  | ||||     ||| | |||||| | ||||||||||||||||||||||||||||||||||||||||||||||    
T  3657547 ctaagctgcttacatataaatcgaaaggacctctagttcttaaactcacgg-gctgtgtgatgatgacatagcgaactattctttcgccttttactaaag 3657645  T
Q  315 aataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaattttttatttt 410  Q
    |||||||||| ||| |||||| || |||||||  ||||||||||||||| || |||| || |||| ||||||||||||||||||||||||||||||    
T  3657646 aataccgtgtcagcgtcacaaatagcggcatacactagtttttggaaggatcatctttatcgaggactctgcaatattagttcaattttttatttt 3657741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 102; E-Value: 2e-50
Query Start/End: Original strand, 188 - 405
Target Start/End: Original strand, 3646953 - 3647170
Alignment:
Q  188 cccacattggctagcgcataagtgaaactaagctgctcatatataaaaggaaaacatctcttcaatttataatcacggagttgtgtgatgatgacatagc 287  Q
    ||||||| ||||| | |||||| |||||||||||||||  ||||||||||||   | |||  |  || ||||||||||||  ||||||||||||||||||    
T  3646953 cccacatcggctaactcataagagaaactaagctgctctcatataaaaggaatggacctccactgttgataatcacggagccgtgtgatgatgacatagc 3647052  T
Q  288 gaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgca 387  Q
     |||||||||||||||||||||||||||||||||||| ||| |||| |||| |||||||  |||||||||| |||||||||||| |||||||||||||||    
T  3647053 aaactattctttcgccttttactaaagaataccgtgtcagcgtcactattagcggcatacactagtttttgaaagggtcctctttattgagggctctgca 3647152  T
Q  388 atattagttcaatttttt 405  Q
    || ||||| |||| ||||    
T  3647153 atgttagtgcaatgtttt 3647170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 166 - 348
Target Start/End: Original strand, 3641111 - 3641293
Alignment:
Q  166 ttgtctatgttctgacttaagtcccacattggctagcgcataagtgaaactaagctgctcatatataaaaggaaaacatctcttcaatttataatcacgg 265  Q
    ||||| ||||||||||| ||||| ||||| ||||||| || ||| |||||||||||||||  |||||||| ||||| | ||   |  || ||| ||||      
T  3641111 ttgtcaatgttctgactcaagtctcacatcggctagcacacaagagaaactaagctgctctcatataaaaagaaaagacctgcactgttgatagtcacat 3641210  T
Q  266 agttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatg 348  Q
    ||  |||||||||||||||||||||||||||||||||||||||||||||||||| || | ||| |||||| ||  ||||||||    
T  3641211 agccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaatactgtatcagcgtcacaaatagtggcatatg 3641293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 301 - 403
Target Start/End: Original strand, 3648192 - 3648293
Alignment:
Q  301 gccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaat 400  Q
    |||||||| |||| ||||| |||| ||  || |||||| ||||||| |||| |||| ||||||||||||||  ||||||||||| ||||| |||||||||    
T  3648192 gccttttattaaacaatactgtgtcagtgtcgcaattagcggcatacgctaatttt-ggaagggtcctctttgttgagggctcttcaatagtagttcaat 3648290  T
Q  401 ttt 403  Q
    |||    
T  3648291 ttt 3648293  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 341 - 404
Target Start/End: Original strand, 3656184 - 3656247
Alignment:
Q  341 ggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaattttt 404  Q
    |||||| ||||||||||||||| ||||||||  ||||||||||| |||| || |||||||||||    
T  3656184 ggcatacgctagtttttggaagagtcctctttgttgagggctcttcaatgttcgttcaattttt 3656247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 101 - 146
Target Start/End: Original strand, 3653433 - 3653478
Alignment:
Q  101 tcctccaccagcacttcttcgagagtagattgaaatagttctacat 146  Q
    ||||||||||| ||||||||||| |||||  |||||||||||||||    
T  3653433 tcctccaccagaacttcttcgagcgtagaaagaaatagttctacat 3653478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 390
Target Start/End: Original strand, 3638935 - 3638994
Alignment:
Q  330 tcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaata 390  Q
    ||||||||| ||||||| | |||||||||||||||| ||||| ||||||| |||| |||||    
T  3638935 tcacaattaacggcata-gttagtttttggaagggttctctttattgaggactctacaata 3638994  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 176 - 240
Target Start/End: Original strand, 3655934 - 3655998
Alignment:
Q  176 tctgacttaagtcccacattggctagcgcataagtgaaactaagctgctcatatataaaaggaaa 240  Q
    ||||||| |||||||||||  |||| | ||| ||| ||||||||||||||| |||||||| ||||    
T  3655934 tctgactgaagtcccacatcagctaacacatgagttaaactaagctgctcacatataaaaagaaa 3655998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 105; Significance: 4e-52; HSPs: 5)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 105; E-Value: 4e-52
Query Start/End: Original strand, 258 - 410
Target Start/End: Complemental strand, 31555236 - 31555084
Alignment:
Q  258 aatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagttttt 357  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||    
T  31555236 aatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagttttt 31555137  T
Q  358 ggaagggtcctcttaattgagggctctgcaatattagttcaattttttatttt 410  Q
    ||||| ||| |||| |||||||||||||||||||||||| |||||||| ||||    
T  31555136 ggaagagtcttctttattgagggctctgcaatattagtttaattttttttttt 31555084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 258 - 405
Target Start/End: Original strand, 31878233 - 31878380
Alignment:
Q  258 aatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagttttt 357  Q
    ||||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| ||||||||||    
T  31878233 aatcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagttttt 31878332  T
Q  358 ggaagggtcctcttaattgagggctctgcaatattagttcaatttttt 405  Q
    ||||| ||| |||| |||||||||||||||||||||||| ||||||||    
T  31878333 ggaagagtcttctttattgagggctctgcaatattagtttaatttttt 31878380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 253 - 388
Target Start/End: Complemental strand, 31558326 - 31558191
Alignment:
Q  253 tttataatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctag 352  Q
    ||||||| || ||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| | | ||||||||| ||||||| | |||    
T  31558326 tttataagcatggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgaacgtcacaattagcggcatacgttag 31558227  T
Q  353 tttttggaagggtcctcttaattgagggctctgcaa 388  Q
    ||||| |||| |||||||  ||||||||||||||||    
T  31558226 tttttagaagagtcctctatattgagggctctgcaa 31558191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 270 - 315
Target Start/End: Complemental strand, 13568474 - 13568429
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaaga 315  Q
    ||||||| || |||||||||||||||||||||||||||||||||||    
T  13568474 gtgtgataatcacatagcgaactattctttcgccttttactaaaga 13568429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 289 - 362
Target Start/End: Complemental strand, 4042275 - 4042202
Alignment:
Q  289 aactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaag 362  Q
    |||||||||||||||||| |||||||||||| |||    | |||| |||| |||||||||| | ||||||||||    
T  4042275 aactattctttcgcctttgactaaagaatactgtgggctcgtcactattaacggcatatgccaatttttggaag 4042202  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 100; Significance: 4e-49; HSPs: 14)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 100; E-Value: 4e-49
Query Start/End: Original strand, 259 - 406
Target Start/End: Original strand, 10109299 - 10109446
Alignment:
Q  259 atcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttg 358  Q
    |||||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||||| |||||||||||    
T  10109299 atcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacgctagtttttg 10109398  T
Q  359 gaagggtcctcttaattgagggctctgcaatattagttcaatttttta 406  Q
    |||| |||||||| || |||||||||||||| |||||| |||||||||    
T  10109399 gaagagtcctctttatggagggctctgcaattttagttaaatttttta 10109446  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 228 - 405
Target Start/End: Original strand, 10105855 - 10106032
Alignment:
Q  228 atataaaaggaaaacatctcttcaatttataatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttag 327  Q
    |||||||| ||||  |||||| |  ||| ||| |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||    
T  10105855 atataaaatgaaaggatctctactttttttaagcacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgag 10105954  T
Q  328 catcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaatattagttcaatttttt 405  Q
    | ||| ||||| ||||||| ||||||||||||||| |||||||| ||||||||||||||||  |||||||||||||||    
T  10105955 cgtcataattagcggcatacgctagtttttggaagagtcctctttattgagggctctgcaaatttagttcaatttttt 10106032  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 96; E-Value: 9e-47
Query Start/End: Original strand, 262 - 405
Target Start/End: Original strand, 10102805 - 10102948
Alignment:
Q  262 acggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaa 361  Q
    |||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| |||||||  |||||||||||||    
T  10102805 acggagctgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaattagcggcatacactagtttttggaa 10102904  T
Q  362 gggtcctcttaattgagggctctgcaatattagttcaatttttt 405  Q
    | |||||||| ||||||||||||||||  |||||||||| ||||    
T  10102905 gagtcctcttcattgagggctctgcaaatttagttcaatatttt 10102948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 258 - 400
Target Start/End: Complemental strand, 10209840 - 10209698
Alignment:
Q  258 aatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagttttt 357  Q
    ||||||||||  |||||||||  |||||||||||||||||||||||||||||||||||||||||||| ||| ||||||| |  |||||| | ||||||||    
T  10209840 aatcacggagccgtgtgatgaacacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatgagtggcatacgttagttttt 10209741  T
Q  358 ggaagggtcctcttaattgagggctctgcaatattagttcaat 400  Q
    ||||| || ||||| || |||||||||||||| ||||||||||    
T  10209740 ggaagagttctctttatggagggctctgcaattttagttcaat 10209698  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 270 - 405
Target Start/End: Complemental strand, 10212379 - 10212244
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctc 369  Q
    |||||||||| ||||||||||||||||||||||||||||||||||||||| |||| ||  ||||||||| ||||||| ||||||||||||||| ||||||    
T  10212379 gtgtgatgatcacatagcgaactattctttcgccttttactaaagaatactgtgtgagtgtcacaattagcggcatacgctagtttttggaagagtcctc 10212280  T
Q  370 ttaattgagggctctgcaatattagttcaatttttt 405  Q
     | |  || ||||||||||| ||||| |||| ||||    
T  10212279 ctcaccgaaggctctgcaattttagtacaatatttt 10212244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 271 - 405
Target Start/End: Complemental strand, 9660333 - 9660199
Alignment:
Q  271 tgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctct 370  Q
    ||||||||| ||||||||||||||| ||| ||||||||||||||||||| |||| | | ||||||||| | |||||||| |||||||||||| ||||| |    
T  9660333 tgtgatgatcacatagcgaactattattttgccttttactaaagaatactgtgtgaacgtcacaattagcagcatatgccagtttttggaagagtcctat 9660234  T
Q  371 taattgagggctctgcaatattagttcaatttttt 405  Q
    | || ||| |||||||||| |||||||||| ||||    
T  9660233 tcatggagtgctctgcaattttagttcaatatttt 9660199  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 66; E-Value: 7e-29
Query Start/End: Original strand, 272 - 405
Target Start/End: Original strand, 13856027 - 13856160
Alignment:
Q  272 gtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctctt 371  Q
    |||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| |  | |||| |||||||  ||||||||||| || ||||||||    
T  13856027 gtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgttgctattagcggcatacactagtttttgggagagtcctctt 13856126  T
Q  372 aattgagggctctgcaatattagttcaatttttt 405  Q
     |  ||||||| |||||| |||||||||| ||||    
T  13856127 cacagagggctttgcaattttagttcaatatttt 13856160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 273 - 382
Target Start/End: Complemental strand, 12109442 - 12109332
Alignment:
Q  273 tgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgg-aagggtcctctt 371  Q
    ||||||| ||||||| |||||||||||||||||||||||||||||||||||| ||| ||||||||   |||||| |||||||||||| ||| ||| ||||    
T  12109442 tgatgatcacatagcaaactattctttcgccttttactaaagaataccgtgtgagcgtcacaatttgtggcatacgctagtttttggaaagagtcatctt 12109343  T
Q  372 aattgagggct 382  Q
     ||||||||||    
T  12109342 cattgagggct 12109332  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 270 - 325
Target Start/End: Complemental strand, 9674817 - 9674762
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtt 325  Q
    |||||||||| ||| || ||||||||||||||||||||||||||||||||||||||    
T  9674817 gtgtgatgatcacaaagtgaactattctttcgccttttactaaagaataccgtgtt 9674762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 331 - 405
Target Start/End: Complemental strand, 9674141 - 9674066
Alignment:
Q  331 cacaattatcggcatatgctagtttttggaagg-gtcctcttaattgagggctctgcaatattagttcaatttttt 405  Q
    |||||||  |||||||||||||||||||||| | ||| |||| ||||||||||||||||||||||| |||| ||||    
T  9674141 cacaatttgcggcatatgctagtttttggaaagagtcatcttcattgagggctctgcaatattagtacaatgtttt 9674066  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 270 - 313
Target Start/End: Complemental strand, 12104651 - 12104608
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaa 313  Q
    |||||||||| |||||||||||||||||||||||||||||||||    
T  12104651 gtgtgatgatcacatagcgaactattctttcgccttttactaaa 12104608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 270 - 316
Target Start/End: Complemental strand, 37278781 - 37278735
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaa 316  Q
    |||||||||  ||||| ||||||||||||||||||||||||||||||    
T  37278781 gtgtgatgagcacataacgaactattctttcgccttttactaaagaa 37278735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 264 - 320
Target Start/End: Complemental strand, 10215984 - 10215928
Alignment:
Q  264 ggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaatacc 320  Q
    |||| |||||| |||| ||||||  ||||||||||| ||||||||||||||||||||    
T  10215984 ggagctgtgtgttgatcacatagtaaactattcttttgccttttactaaagaatacc 10215928  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 289 - 320
Target Start/End: Complemental strand, 3467698 - 3467667
Alignment:
Q  289 aactattctttcgccttttactaaagaatacc 320  Q
    ||||||||||||||||||||||||||||||||    
T  3467698 aactattctttcgccttttactaaagaatacc 3467667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 93; Significance: 6e-45; HSPs: 11)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 260 - 404
Target Start/End: Complemental strand, 45316516 - 45316372
Alignment:
Q  260 tcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgg 359  Q
    ||||||||  ||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||||  ||| ||||||| | ||||||||||    
T  45316516 tcacggagccgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcaacgtcacttttaacggcatacgttagtttttgg 45316417  T
Q  360 aagggtcctcttaattgagggctctgcaatattagttcaattttt 404  Q
    ||| | ||||||||||||||||||||||||||||||| |||||||    
T  45316416 aagagccctcttaattgagggctctgcaatattagttaaattttt 45316372  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 91; E-Value: 9e-44
Query Start/End: Original strand, 167 - 405
Target Start/End: Original strand, 42409504 - 42409740
Alignment:
Q  167 tgtctatgttctgacttaagtcccacattggctagcgcataagtgaaactaagctgctcatatataaaaggaaaacatctcttcaatttataatcacgga 266  Q
    |||||||||||||||  | ||||||||| |||||  || |||| ||||||  |||||||  |||||||| ||||  |||||| |   | |||| ||||||    
T  42409504 tgtctatgttctgaccaatgtcccacatcggctaatgcgtaagagaaactctgctgctcccatataaaatgaaatgatctctactggt-ataagcacgga 42409602  T
Q  267 gttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtc 366  Q
    | |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| || |||| | ||||||||||||| |||    
T  42409603 gctgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttaacgacatacgttagtttttggaagagtc 42409702  T
Q  367 ctcttaattgagggctctgcaatattagttcaatttttt 405  Q
    || ||  ||||||||||||||||| |||||||| |||||    
T  42409703 ctttttgttgagggctctgcaata-tagttcaaattttt 42409740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 84; E-Value: 1e-39
Query Start/End: Original strand, 257 - 396
Target Start/End: Original strand, 45151989 - 45152128
Alignment:
Q  257 taatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttt 356  Q
    |||| ||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||| ||||||| |||||||||    
T  45151989 taattacggagccgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttt 45152088  T
Q  357 tggaagggtcctcttaattgagggctctgcaatattagtt 396  Q
    |||||| |||||||| |  |||||||||||||||||||||    
T  45152089 tggaagagtcctctttacggagggctctgcaatattagtt 45152128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 42202493 - 42202363
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 360  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||||||||    
T  42202493 cacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagtttttgga 42202394  T
Q  361 agggtcctcttaattgagggctctgcaatat 391  Q
    || ||| ||||  | ||||||||||||||||    
T  42202393 agagtcttctttttggagggctctgcaatat 42202363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 42211361 - 42211231
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 360  Q
    |||||||  ||||| ||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||| ||| ||||||| |||||||||||||    
T  42211361 cacggagccgtgtgttgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgtcacatttagcggcatacgctagtttttgga 42211262  T
Q  361 agggtcctcttaattgagggctctgcaatat 391  Q
    || ||| ||||  | ||||||||||||||||    
T  42211261 agagtcttctttttggagggctctgcaatat 42211231  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 261 - 391
Target Start/End: Complemental strand, 2176420 - 2176290
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 360  Q
    |||||||  ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||  ||||| ||| ||||||| |||||||||||||    
T  2176420 cacggagacgtgtgataatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagtgtcacatttagcggcatacgctagtttttgga 2176321  T
Q  361 agggtcctcttaattgagggctctgcaatat 391  Q
    || ||| | ||||  |||| |||||||||||    
T  2176320 agagtctttttaacggaggactctgcaatat 2176290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 261 - 362
Target Start/End: Original strand, 10542392 - 10542493
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 360  Q
    |||||||  |||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||| | ||||||| ||||||| |||||||||||||    
T  10542392 cacggagccgtgtgatgatcacatagcgaactattctttcgccttttactaaagaataccgtgtgagcgttacaattagcggcatacgctagtttttgga 10542491  T
Q  361 ag 362  Q
    ||    
T  10542492 ag 10542493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 258 - 396
Target Start/End: Complemental strand, 43014433 - 43014295
Alignment:
Q  258 aatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagttttt 357  Q
    ||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||  || ||||   || ||||||| | || |||||    
T  43014433 aatcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgtgcgtcacttataacggcatacgttaattttt 43014334  T
Q  358 ggaagggtcctcttaattgagggctctgcaatattagtt 396  Q
    | ||| |  ||||| ||||||||||||||||||||||||    
T  43014333 gaaagagctctcttgattgagggctctgcaatattagtt 43014295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 270 - 386
Target Start/End: Original strand, 51795026 - 51795142
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctc 369  Q
    |||||||||||||||||| ||||||| |||||||||||||||||||||| ||| | | | ||||| ||  ||||||||||||||||||||||| ||| ||    
T  51795026 gtgtgatgatgacatagcaaactattgtttcgccttttactaaagaatagcgtatcaacgtcacattttgcggcatatgctagtttttggaagagtcatc 51795125  T
Q  370 ttaattgagggctctgc 386  Q
    ||  | |||||||||||    
T  51795126 tttttggagggctctgc 51795142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 261 - 320
Target Start/End: Original strand, 42417641 - 42417700
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaatacc 320  Q
    ||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||    
T  42417641 cacggagctgtgtgatgatgacatagcgaattattctttcgccttttactaaagaatacc 42417700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 270 - 351
Target Start/End: Complemental strand, 42217327 - 42217246
Alignment:
Q  270 gtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgcta 351  Q
    ||||||||| |||||||||||||||||||||||||||||||||||||||| |||| ||  || || ||| ||||||||||||    
T  42217327 gtgtgatgacgacatagcgaactattctttcgccttttactaaagaatactgtgtcagggtcgcatttagcggcatatgcta 42217246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 82; Significance: 2e-38; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 271 - 396
Target Start/End: Original strand, 46446224 - 46446349
Alignment:
Q  271 tgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctct 370  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | || ||| | |||||| ||||||||||||||| ||| |||    
T  46446224 tgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgtcagcgttactatttttggcatacgctagtttttggaagagtcttct 46446323  T
Q  371 taattgagggctctgcaatattagtt 396  Q
    ||||||| |||||| |||||||||||    
T  46446324 taattgaaggctctacaatattagtt 46446349  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 253 - 404
Target Start/End: Complemental strand, 21884168 - 21884017
Alignment:
Q  253 tttataatcacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctag 352  Q
    |||| ||||||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||  || ||||    | ||||||| | ||     
T  21884168 tttaaaatcacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgttaa 21884069  T
Q  353 tttttggaagggtcctcttaattgagggctctgcaatattagttcaattttt 404  Q
    |||||| ||| ||||| || |  |||||||||||||||| ||||||||||||    
T  21884068 tttttgaaagagtccttttcaccgagggctctgcaatataagttcaattttt 21884017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 261 - 372
Target Start/End: Original strand, 25698808 - 25698919
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 360  Q
    ||||||| ||||||||||| |||||| | ||||||||||||||||||| ||||||||||||||| ||| ||| ||||| ||||||| |||||||||||||    
T  25698808 cacggagctgtgtgatgatcacatagtggactattctttcgccttttattaaagaataccgtgtgagcgtcataattagcggcatacgctagtttttgga 25698907  T
Q  361 agggtcctctta 372  Q
    ||  ||||||||    
T  25698908 agaatcctctta 25698919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 261 - 410
Target Start/End: Original strand, 17889422 - 17889571
Alignment:
Q  261 cacggagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttgga 360  Q
    |||||||  |||||||||  ||||||||||||||||||||||||||||||||||||||||||||   | |||| |  | ||||||| |||| |||||| |    
T  17889422 cacggagccgtgtgatgagcacatagcgaactattctttcgccttttactaaagaataccgtgtgcacgtcactaaaagcggcatacgctaatttttgaa 17889521  T
Q  361 agggtcctcttaattgagggctctgcaatattagttcaattttttatttt 410  Q
    || |||||| | | |||||| ||||||||||||||| ||| |||||||||    
T  17889522 agagtcctccttaatgagggttctgcaatattagtttaatattttatttt 17889571  T

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Target: chr4; HSP #3
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 265 - 357
Target Start/End: Complemental strand, 46362599 - 46362507
Alignment:
Q  265 gagttgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagttttt 357  Q
    |||| |||| ||||||||||||||||||||| |||||| ||||||||||||||||| ||| ||||||||| ||| ||| ||| | ||||||||    
T  46362599 gagtcgtgtaatgatgacatagcgaactattatttcgctttttactaaagaataccatgtcagcatcacatttagcggtatacgttagttttt 46362507  T

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Target: chr4; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 324
Target Start/End: Original strand, 36790859 - 36790898
Alignment:
Q  285 agcgaactattctttcgccttttactaaagaataccgtgt 324  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  36790859 agcgaactattctttcgccttttactaaagaataccgtgt 36790898  T

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Target: chr4; HSP #5
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 285 - 324
Target Start/End: Complemental strand, 49588234 - 49588195
Alignment:
Q  285 agcgaactattctttcgccttttactaaagaataccgtgt 324  Q
    ||||||||||||||||||||||||||||||||||||||||    
T  49588234 agcgaactattctttcgccttttactaaagaataccgtgt 49588195  T

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Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 276 - 315
Target Start/End: Original strand, 20918686 - 20918725
Alignment:
Q  276 tgatgacatagcgaactattctttcgccttttactaaaga 315  Q
    |||| ||||||| |||||||||||||||||||||||||||    
T  20918686 tgatcacatagcaaactattctttcgccttttactaaaga 20918725  T

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Target: chr2 (Bit Score: 53; Significance: 4e-21; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 53; E-Value: 4e-21
Query Start/End: Original strand, 269 - 409
Target Start/End: Original strand, 26568346 - 26568486
Alignment:
Q  269 tgtgtgatgatgacatagcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcct 368  Q
    ||||||||||  ||||||||||||||||||| ||||||||||||||||||||||||  || ||||    | ||||||| |||| |||||| ||| |  ||    
T  26568346 tgtgtgatgagcacatagcgaactattcttttgccttttactaaagaataccgtgtgcgcgtcacttaaagcggcatacgctaatttttgaaagagctct 26568445  T
Q  369 cttaattgagggctctgcaatattagttcaattttttattt 409  Q
    ||| |||||| |||||||||||| |||| || |||||||||    
T  26568446 ctttattgagagctctgcaatatcagtttaaatttttattt 26568486  T

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Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000006
Query Start/End: Original strand, 285 - 405
Target Start/End: Original strand, 5900549 - 5900668
Alignment:
Q  285 agcgaactattctttcgccttttactaaagaataccgtgttagcatcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctct 384  Q
    ||||||||||||||||||||||||||||||||||||||||  |  ||||  | | ||| ||| |||  ||||||||||||| |||  ||  ||| || ||    
T  5900549 agcgaactattctttcgccttttactaaagaataccgtgtgcgtgtcactttaagcggtatacgcttatttttggaagggttctc-gaaaagagagccct 5900647  T
Q  385 gcaatattagttcaatttttt 405  Q
    |||||||||||||||||||||    
T  5900648 gcaatattagttcaatttttt 5900668  T

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Target: chr2; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 288 - 324
Target Start/End: Complemental strand, 43633480 - 43633444
Alignment:
Q  288 gaactattctttcgccttttactaaagaataccgtgt 324  Q
    |||||||||||||||||||||||||||||||||||||    
T  43633480 gaactattctttcgccttttactaaagaataccgtgt 43633444  T

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Target: chr6 (Bit Score: 44; Significance: 0.000000000000001; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 281 - 324
Target Start/End: Original strand, 33891612 - 33891655
Alignment:
Q  281 acatagcgaactattctttcgccttttactaaagaataccgtgt 324  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  33891612 acatagcgaactattctttcgccttttactaaagaataccgtgt 33891655  T

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Target: scaffold0287 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0287
Description:

Target: scaffold0287; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 330 - 390
Target Start/End: Complemental strand, 7150 - 7091
Alignment:
Q  330 tcacaattatcggcatatgctagtttttggaagggtcctcttaattgagggctctgcaata 390  Q
    ||||||||| ||||||| | |||||||||||||||| ||||| ||||||| |||| |||||    
T  7150 tcacaattaacggcata-gttagtttttggaagggttctctttattgaggactctacaata 7091  T

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