View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5860A-LTR4-TNT-insertion-2 (Length: 276)

Name: SO5860A-LTR4-TNT-insertion-2
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5860A-LTR4-TNT-insertion-2
SO5860A-LTR4-TNT-insertion-2
[»] chr2 (15 HSPs)
chr2 (9-267)||(33053340-33053598)
chr2 (128-267)||(33051541-33051680)
chr2 (140-256)||(1218326-1218442)
chr2 (128-248)||(23457588-23457708)
chr2 (128-256)||(5171612-5171740)
chr2 (124-248)||(32163794-32163919)
chr2 (133-248)||(4184870-4184986)
chr2 (134-248)||(12966418-12966532)
chr2 (128-256)||(32161996-32162125)
chr2 (128-248)||(36647234-36647354)
chr2 (150-248)||(36648907-36649007)
chr2 (131-257)||(21772307-21772433)
chr2 (128-245)||(28737782-28737899)
chr2 (134-248)||(36615150-36615266)
chr2 (122-245)||(18945905-18946028)
[»] chr1 (21 HSPs)
chr1 (131-256)||(10927128-10927251)
chr1 (128-249)||(12944057-12944178)
chr1 (133-248)||(9030958-9031074)
chr1 (156-252)||(8221426-8221522)
chr1 (131-252)||(50713651-50713772)
chr1 (131-248)||(28660776-28660894)
chr1 (156-256)||(31915483-31915584)
chr1 (128-257)||(10925673-10925799)
chr1 (128-248)||(43681401-43681524)
chr1 (164-248)||(239629-239713)
chr1 (122-190)||(50857466-50857533)
chr1 (171-237)||(8965845-8965911)
chr1 (195-256)||(9195036-9195097)
chr1 (132-240)||(10928239-10928347)
chr1 (128-257)||(21903685-21903813)
chr1 (139-256)||(33152757-33152877)
chr1 (195-245)||(23987517-23987567)
chr1 (222-256)||(36694679-36694713)
chr1 (222-256)||(36710780-36710814)
chr1 (203-248)||(9199317-9199362)
chr1 (122-190)||(8931220-8931287)
[»] chr7 (25 HSPs)
chr7 (132-256)||(24840077-24840201)
chr7 (128-256)||(1369739-1369867)
chr7 (166-256)||(1690196-1690286)
chr7 (11-81)||(29138398-29138468)
chr7 (128-257)||(11000853-11000982)
chr7 (128-255)||(1365606-1365733)
chr7 (128-256)||(6451777-6451905)
chr7 (128-248)||(8916404-8916524)
chr7 (132-256)||(11228915-11229039)
chr7 (133-257)||(35814804-35814927)
chr7 (122-249)||(27309636-27309763)
chr7 (128-245)||(5934549-5934666)
chr7 (134-267)||(27142589-27142722)
chr7 (128-248)||(30217755-30217875)
chr7 (203-257)||(8063898-8063952)
chr7 (123-248)||(1786625-1786750)
chr7 (203-256)||(4955966-4956019)
chr7 (195-254)||(2767866-2767926)
chr7 (202-245)||(1785499-1785541)
chr7 (128-248)||(3778736-3778861)
chr7 (210-256)||(4133398-4133444)
chr7 (148-248)||(4888732-4888833)
chr7 (156-248)||(11228662-11228755)
chr7 (195-240)||(18790266-18790311)
chr7 (205-256)||(19404213-19404265)
[»] chr6 (15 HSPs)
chr6 (123-257)||(32361301-32361434)
chr6 (122-256)||(11658865-11658999)
chr6 (131-246)||(27822148-27822264)
chr6 (129-256)||(1127188-1127315)
chr6 (164-245)||(12882067-12882149)
chr6 (146-256)||(24443116-24443226)
chr6 (187-256)||(34373872-34373941)
chr6 (193-248)||(18727937-18727992)
chr6 (156-249)||(12778454-12778548)
chr6 (128-233)||(33615531-33615636)
chr6 (122-190)||(3542245-3542312)
chr6 (133-264)||(24664190-24664321)
chr6 (122-184)||(30052209-30052270)
chr6 (222-267)||(3814500-3814545)
chr6 (203-248)||(14216837-14216882)
[»] chr4 (16 HSPs)
chr4 (128-248)||(13991406-13991526)
chr4 (128-248)||(7634022-7634142)
chr4 (132-256)||(21433594-21433718)
chr4 (134-258)||(38888023-38888147)
chr4 (128-256)||(40206082-40206210)
chr4 (156-247)||(13990732-13990823)
chr4 (124-239)||(18689544-18689659)
chr4 (200-245)||(10494848-10494893)
chr4 (148-248)||(19935428-19935529)
chr4 (122-190)||(6659352-6659419)
chr4 (131-234)||(15848361-15848463)
chr4 (210-256)||(17255007-17255053)
chr4 (205-247)||(28897913-28897955)
chr4 (200-249)||(3765306-3765355)
chr4 (195-248)||(9260515-9260568)
chr4 (227-256)||(50519405-50519434)
[»] scaffold0090 (1 HSPs)
scaffold0090 (128-244)||(15092-15207)
[»] chr8 (19 HSPs)
chr8 (129-245)||(2687687-2687803)
chr8 (128-248)||(24730974-24731094)
chr8 (128-267)||(14130088-14130227)
chr8 (178-256)||(16598100-16598178)
chr8 (186-248)||(30440679-30440741)
chr8 (134-248)||(2188374-2188490)
chr8 (139-248)||(26374842-26374950)
chr8 (128-248)||(2189749-2189868)
chr8 (178-256)||(24577605-24577683)
chr8 (123-249)||(24578799-24578925)
chr8 (122-254)||(16598184-16598317)
chr8 (134-248)||(20693741-20693855)
chr8 (203-248)||(26377973-26378018)
chr8 (128-229)||(24731188-24731289)
chr8 (122-190)||(22921872-22921939)
chr8 (122-190)||(22926670-22926737)
chr8 (156-246)||(2609550-2609640)
chr8 (200-249)||(10629217-10629266)
chr8 (122-190)||(37189866-37189933)
[»] chr5 (4 HSPs)
chr5 (128-255)||(492501-492629)
chr5 (128-256)||(18252350-18252478)
chr5 (122-235)||(26140298-26140411)
chr5 (123-237)||(19497326-19497441)
[»] scaffold0054 (2 HSPs)
scaffold0054 (124-256)||(37646-37776)
scaffold0054 (124-248)||(49264-49387)
[»] chr3 (5 HSPs)
chr3 (195-256)||(1320143-1320204)
chr3 (128-248)||(2472716-2472836)
chr3 (219-264)||(20400733-20400778)
chr3 (195-256)||(8536467-8536528)
chr3 (164-256)||(365655-365748)
[»] scaffold0251 (1 HSPs)
scaffold0251 (128-248)||(9644-9765)
[»] scaffold0024 (2 HSPs)
scaffold0024 (131-246)||(145677-145793)
scaffold0024 (206-253)||(144022-144069)
[»] scaffold0240 (2 HSPs)
scaffold0240 (148-248)||(15989-16089)
scaffold0240 (128-248)||(1599-1719)


Alignment Details
Target: chr2 (Bit Score: 259; Significance: 1e-144; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 9 - 267
Target Start/End: Complemental strand, 33053598 - 33053340
Alignment:
Q  9 acaaaggacttgactgccatacatgaagttctcgaaaatattggctataaagaatatgatggggtggcaaatgggttgtcttttcaaatgtggacggatc 108  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33053598 acaaaggacttgactgccatacatgaagttctcgaaaatattggctataaagaatatgatggggtggcaaatgggttgtcttttcaaatgtggacggatc 33053499  T
Q  109 aaatgcaggattcgttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaat 208  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33053498 aaatgcaggattcgttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaat 33053399  T
Q  209 tgagaaaatcctctaaaatattattgaatgaataaaagttgtctcttaaacaacaattg 267  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  33053398 tgagaaaatcctctaaaatattattgaatgaataaaagttgtctcttaaacaacaattg 33053340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 76; E-Value: 3e-35
Query Start/End: Original strand, 128 - 267
Target Start/End: Complemental strand, 33051680 - 33051541
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| ||| |||||||||||| ||||||| |||||||||| || ||||||| ||||| || |||| || ||||||||||||||  |||||||||    
T  33051680 aagcgctaaacctaaattgaaaaagaacaagtttgcaagcgacaaacttttgaaaatagggttctggaatccactagaaattgagaaaactctctaaaat 33051581  T
Q  228 attattgaatgaataaaagttgtctcttaaacaacaattg 267  Q
    ||||||||||||||| ||||||||||||| || |||||||    
T  33051580 attattgaatgaatataagttgtctcttagactacaattg 33051541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 140 - 256
Target Start/End: Original strand, 1218326 - 1218442
Alignment:
Q  140 tagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatga 239  Q
    |||||||||||||||||||||||||| ||||||| || ||||||| |  ||    ||||||  ||||||||||||||| |||||||||||||||||||||    
T  1218326 tagattgaaaaagaataagtttgtaaacgacaaatttgtgaaaatagaatttcataatctattagaaattgagaaaattctctaaaatattattgaatga 1218425  T
Q  240 ataaaagttgtctctta 256  Q
    |||||||||||||||||    
T  1218426 ataaaagttgtctctta 1218442  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 23457708 - 23457588
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| ||||||||||||  || ||||||| |||||||||| || ||||||| |||||  | |||| |||| ||||||||||||  |||||||||    
T  23457708 aagcgctaaacctagattgaaaataaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccaaaaattgagaaaactctctaaaat 23457609  T
Q  228 attattgaatgaataaaagtt 248  Q
    |||||||||||||||||||||    
T  23457608 attattgaatgaataaaagtt 23457588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 5171612 - 5171740
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||||||||||||||||   | ||||||| |||||||||| || | ||||| |||||    |||| || ||||||||||||||  |||||||||    
T  5171612 aagcgctaaatctagattgaaaagagacaagtttgcaagcgacaaacttgtaaaaatagggttcaagaatccactagaaattgagaaaactctctaaaat 5171711  T
Q  228 attattgaatgaataaaagttgtctctta 256  Q
    |||||| ||||||||||| ||||||||||    
T  5171712 attatttaatgaataaaaattgtctctta 5171740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 124 - 248
Target Start/End: Original strand, 32163794 - 32163919
Alignment:
Q  124 tagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa-tcctct 222  Q
    ||||||||| |||| ||||||||||||  |||||||||||||||| |||| || |||||||  ||||  | |||| |  | |||||||||||| | ||||    
T  32163794 tagaaagcgttaaacctagattgaaaagaaataagtttgtaagcgtcaaacttgtgaaaatatggtttcggaatccatgataaattgagaaaacttctct 32163893  T
Q  223 aaaatattattgaatgaataaaagtt 248  Q
    ||||||||||||||||||||||||||    
T  32163894 aaaatattattgaatgaataaaagtt 32163919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 4184986 - 4184870
Alignment:
Q  133 ctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaatatta 231  Q
    |||||| |||||| ||||  |||||||| | |||||||||| || ||||||| |||||  | |||| || |||||||||||||| | |||||||||||||    
T  4184986 ctaaatatagattcaaaagaaataagttcgcaagcgacaaacttgtgaaaatagggtttcggaatccacgagaaattgagaaaaactctctaaaatatta 4184887  T
Q  232 ttgaatgaataaaagtt 248  Q
    |||||||||||||||||    
T  4184886 ttgaatgaataaaagtt 4184870  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 12966532 - 12966418
Alignment:
Q  134 taaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaatattat 232  Q
    ||||||||||||||||| ||| ||||| | ||||||| || || ||||||| |||||  |||||| |||| |||||||||||| | ||||||||||||||    
T  12966532 taaatctagattgaaaa-gaacaagttcgcaagcgacgaacttgtgaaaatagggttccgaaatccaccaaaaattgagaaaaactctctaaaatattat 12966434  T
Q  233 tgaatgaataaaagtt 248  Q
    ||| ||||||||||||    
T  12966433 tgattgaataaaagtt 12966418  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 32161996 - 32162125
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa-tcctctaaaa 226  Q
    ||||| |||| |||||| |||||  || ||||||| ||| |||||| || ||||||| |||||  | |||| |||||||| |||||||| | ||||||||    
T  32161996 aagcgttaaacctagatcgaaaagaaacaagtttgcaagtgacaaacttgtgaaaatagggttcaggaatccaccagaaactgagaaaacttctctaaaa 32162095  T
Q  227 tattattgaatgaataaaagttgtctctta 256  Q
    ||||||||||| |||||||| || ||||||    
T  32162096 tattattgaataaataaaagctgcctctta 32162125  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 36647354 - 36647234
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgag-aaaatcctctaaaa 226  Q
    |||||||||| || ||||||||| ||| ||||||| |||||||||| || ||||||| ||||| || |||| |||| ||| |||| ||||  |||||||     
T  36647354 aagcgctaaacctcgattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaatagggttttggaatccaccaaaaaatgaggaaaaaactctaaag 36647256  T
Q  227 tattattgaatgaataaaagtt 248  Q
    ||||||||| ||||||||||||    
T  36647255 tattattgattgaataaaagtt 36647234  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 150 - 248
Target Start/End: Complemental strand, 36649007 - 36648907
Alignment:
Q  150 aagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaatt--gagaaaatcctctaaaatattattgaatgaataaaagt 247  Q
    |||| |||||||| ||||||||||||| | ||||| ||||| || |||| ||||||||||  || ||||  ||||||||||||||||| |||||||||||    
T  36649007 aagattaagtttgcaagcgacaaaattgtaaaaatagggttctggaatccaccagaaattaagaaaaaactctctaaaatattattgattgaataaaagt 36648908  T
Q  248 t 248  Q
    |    
T  36648907 t 36648907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 131 - 257
Target Start/End: Complemental strand, 21772433 - 21772307
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctcta-aaatat 229  Q
    |||||||  |||||||||||| || ||||||| |||||||||| |||||||||| |||||    |||| | || ||||||||||||  ||||  ||||||    
T  21772433 cgctaaacttagattgaaaaa-aacaagtttgcaagcgacaaacttatgaaaatagggttcctgaatccatcacaaattgagaaaactctcttgaaatat 21772335  T
Q  230 tattgaatgaataaaagttgtctcttaa 257  Q
    ||||||| ||||||||||| ||||||||    
T  21772334 tattgaacgaataaaagttatctcttaa 21772307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 28737899 - 28737782
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaa-ttatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaa 226  Q
    |||||||||| ||| |||||||| || |||||||| ||| ||||||| || ||||||| | |||    |||| | |||||||||||||||  ||||||||    
T  28737899 aagcgctaaacctaaattgaaaa-gagtaagtttgcaagagacaaaacttgtgaaaatagagtttcagaatccaacagaaattgagaaaactctctaaaa 28737801  T
Q  227 tattattgaatgaataaaa 245  Q
    |||||||||||||||||||    
T  28737800 tattattgaatgaataaaa 28737782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 36615266 - 36615150
Alignment:
Q  134 taaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctct--aaaatatta 231  Q
    |||| ||| ||| ||||||| | |||||| ||||||||||||| | |||||  ||||  | |||| |||||||||| ||||||  ||||  |||||||||    
T  36615266 taaacctatattaaaaaagatttagtttgcaagcgacaaaattgtaaaaataaggttccggaatccaccagaaattaagaaaaaactctctaaaatatta 36615167  T
Q  232 ttgaatgaataaaagtt 248  Q
    |||| ||||||||||||    
T  36615166 ttgattgaataaaagtt 36615150  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 122 - 245
Target Start/End: Complemental strand, 18946028 - 18945905
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctc 221  Q
    ||||| ||||||||||  |||||||| ||  ||||| |||| |||||||||| || ||| ||  | |||  | |||  |||||||||| | ||||| |||    
T  18946028 gttagcaagcgctaaacgtagattgagaagaaataaatttgcaagcgacaaacttgtgagaacagagttccggaattcaccagaaattaataaaattctc 18945929  T
Q  222 taaaatattattgaatgaataaaa 245  Q
    ||||||||||||||||||| ||||    
T  18945928 taaaatattattgaatgaacaaaa 18945905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 63; Significance: 2e-27; HSPs: 21)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 131 - 256
Target Start/End: Complemental strand, 10927251 - 10927128
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatt 230  Q
    ||||||| ||||| |||||||||| ||||||| |||||||||| || ||||||  |||||  | |||| |||||||||||||||||  ||||||||||||    
T  10927251 cgctaaacctagactgaaaaagaacaagtttgcaagcgacaaacttgtgaaaa--gggttccggaatccaccagaaattgagaaaactctctaaaatatt 10927154  T
Q  231 attgaatgaataaaagttgtctctta 256  Q
    ||| ||||||||||||||||||||||    
T  10927153 atttaatgaataaaagttgtctctta 10927128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 62; E-Value: 8e-27
Query Start/End: Original strand, 128 - 249
Target Start/End: Complemental strand, 12944178 - 12944057
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||||||||||||||||  || ||||||| || ||||||| || | ||||| ||||| || |||| |||||||||||||||||  |||||||||    
T  12944178 aagcgctaaatctagattgaaaagaaacaagtttgcaaacgacaaacttgtaaaaatagggttctggaatccaccagaaattgagaaaactctctaaaat 12944079  T
Q  228 attattgaatgaataaaagttg 249  Q
    | ||||||||||||||||||||    
T  12944078 aatattgaatgaataaaagttg 12944057  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 133 - 248
Target Start/End: Complemental strand, 9031074 - 9030958
Alignment:
Q  133 ctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa-tcctctaaaatatta 231  Q
    ||||| ||| |||||||| ||||||||||| |||| | ||| |||||||||| ||||| |  |||| |||| |||||||||||| | |||||||||||||    
T  9031074 ctaaacctatattgaaaaggaataagtttgcaagcaataaacttatgaaaatagggttgtagaatccaccataaattgagaaaacttctctaaaatatta 9030975  T
Q  232 ttgaatgaataaaagtt 248  Q
    |||||||||||||||||    
T  9030974 ttgaatgaataaaagtt 9030958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 156 - 252
Target Start/End: Complemental strand, 8221522 - 8221426
Alignment:
Q  156 aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtct 252  Q
    ||||||| || ||||||| |||||||||| ||||| || |||| |||||||||||||||||  || | |||||| ||||||||||||||||||||||    
T  8221522 aagtttgcaaacgacaaacttatgaaaatagggttctggaatccaccagaaattgagaaaactctttgaaatatcattgaatgaataaaagttgtct 8221426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 131 - 252
Target Start/End: Complemental strand, 50713772 - 50713651
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatt 230  Q
    ||||||| ||||||||||||   | ||||| | | |||||||| || ||||||| |||||  | |||| |||||||||||||||||  ||| ||||||||    
T  50713772 cgctaaacctagattgaaaagagacaagttcgcaggcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaactctcaaaaatatt 50713673  T
Q  231 attgaatgaataaaagttgtct 252  Q
    ||||||||||||||| ||||||    
T  50713672 attgaatgaataaaacttgtct 50713651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 131 - 248
Target Start/End: Original strand, 28660776 - 28660894
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaa-ttgagaaaatcctctaaaatat 229  Q
    ||||||| |||||| || ||  || ||||||| |||||||||| || ||||||| |||||  |||||| |||||||| || ||||||  |||||||||||    
T  28660776 cgctaaacctagatagataagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccaccagaaaatttagaaaactctctaaaatat 28660875  T
Q  230 tattgaatgaataaaagtt 248  Q
    |||||||| ||||||||||    
T  28660876 tattgaattaataaaagtt 28660894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 156 - 256
Target Start/End: Complemental strand, 31915584 - 31915483
Alignment:
Q  156 aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaatattattgaatgaataaaagttgtctct 254  Q
    ||||||| |||||||||| || ||||||| |||||  | |||| ||||||||||||||||| | |||||||||| || ||| |||||||||||| |||||    
T  31915584 aagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactctctaaaatactactgattgaataaaagttatctct 31915485  T
Q  255 ta 256  Q
    ||    
T  31915484 ta 31915483  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 10925799 - 10925673
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| ||| ||||||||| |||   |||| |||||||||| || | |||||  |||| || |||| |||  ||||||| ||||  |||||||||    
T  10925799 aagcgctaaacctaaattgaaaaacaat---tttgcaagcgacaaacttgtaaaaatatggttctggaatccaccgaaaattgaaaaaactctctaaaat 10925703  T
Q  228 attattgaatgaataaaagttgtctcttaa 257  Q
    |||||||||||||||||||||  |||||||    
T  10925702 attattgaatgaataaaagtttcctcttaa 10925673  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 43681524 - 43681401
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaat-aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa-tcctct-aa 224  Q
    |||||||||| ||||||||||||| ||  ||||||| |||||||||| || ||||||| | | |    ||||||||||||||| |||||| | |||| ||    
T  43681524 aagcgctaaacctagattgaaaaaaaaacaagtttgcaagcgacaaatttgtgaaaatagagatccagaatctaccagaaattaagaaaacttctcttaa 43681425  T
Q  225 aatattattgaatgaataaaagtt 248  Q
    ||||||||||||||||||||||||    
T  43681424 aatattattgaatgaataaaagtt 43681401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 164 - 248
Target Start/End: Complemental strand, 239713 - 239629
Alignment:
Q  164 aagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    ||||| |||| |||||||||| |||||  | |||| | | |||||| |||||| |||||||||||||||| ||||||||||||||    
T  239713 aagcgtcaaatttatgaaaatagggttccggaatccaactgaaattaagaaaaccctctaaaatattattaaatgaataaaagtt 239629  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 50857466 - 50857533
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    ||||| |||||||||| |||||| ||||| |||||||||||||||||||||| || ||||||| |||||    
T  50857466 gttagcaagcgctaaacctagatagaaaa-gaataagtttgtaagcgacaaacttgtgaaaatagggtt 50857533  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 171 - 237
Target Start/End: Original strand, 8965845 - 8965911
Alignment:
Q  171 aaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaat 237  Q
    |||||||||||||| ||||| ||||||| | |||||||||||||||  || | ||||||||||||||    
T  8965845 aaaattatgaaaatagggttctgaaatccatcagaaattgagaaaacactatgaaatattattgaat 8965911  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 9195036 - 9195097
Alignment:
Q  195 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||| |||| ||||||| ||||  ||||||| ||||||||||||||||||||| ||||||||    
T  9195036 aatccaccaaaaattgaaaaaactctctaaagtattattgaatgaataaaagtcgtctctta 9195097  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 132 - 240
Target Start/End: Complemental strand, 10928347 - 10928239
Alignment:
Q  132 gctaaatctagattgaaaaaga-ataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatt 230  Q
    |||||| ||||||| ||||||| ||||||||||||| |||||| || |||||||  ||||  | |||| || | ||||||||||||  |||||||||| |    
T  10928347 gctaaacctagatt-aaaaagatataagtttgtaagtgacaaacttgtgaaaataaggtttcggaatccactataaattgagaaaactctctaaaatact 10928249  T
Q  231 attgaatgaa 240  Q
    ||||||||||    
T  10928248 attgaatgaa 10928239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 257
Target Start/End: Complemental strand, 21903813 - 21903685
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||||||||  |||||||||||  |||||||||||| ||||| || || ||||||| |||||  | |||| || | ||||||||||||   |||||| |    
T  21903813 aagcgctaaacttagattgaaaagaaataagtttgtaggcgac-aacttgtgaaaatagggtttcggaatccacaaaaaattgagaaaactttctaaact 21903715  T
Q  228 attattgaatgaataaaagttgtctcttaa 257  Q
    |||||| | ||| ||||| |||||||||||    
T  21903714 attattaagtgagtaaaatttgtctcttaa 21903685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 139 - 256
Target Start/End: Original strand, 33152757 - 33152877
Alignment:
Q  139 ctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctc--taaaatattattgaa 236  Q
    ||||||||||||  || ||||||| |||||||||| ||| || ||| |||||  | |||| |||||||||| ||||||  |||  ||||||||||||||     
T  33152757 ctagattgaaaagaaacaagtttgcaagcgacaaacttacgacaatagggttccggaatccaccagaaattaagaaaaaactctataaaatattattgat 33152856  T
Q  237 tgaataa-aagttgtctctta 256  Q
    ||||||| ||||| |||||||    
T  33152857 tgaataataagttatctctta 33152877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 195 - 245
Target Start/End: Complemental strand, 23987567 - 23987517
Alignment:
Q  195 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaa 245  Q
    |||| |||||||||||||| ||  ||||||||||||||||| |||||||||    
T  23987567 aatccaccagaaattgagataactctctaaaatattattgattgaataaaa 23987517  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 36694679 - 36694713
Alignment:
Q  222 taaaatattattgaatgaataaaagttgtctctta 256  Q
    |||||||||||||||| ||||||||||||||||||    
T  36694679 taaaatattattgaattaataaaagttgtctctta 36694713  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 222 - 256
Target Start/End: Original strand, 36710780 - 36710814
Alignment:
Q  222 taaaatattattgaatgaataaaagttgtctctta 256  Q
    |||||||||||||||| ||||||||||||||||||    
T  36710780 taaaatattattgaattaataaaagttgtctctta 36710814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 248
Target Start/End: Original strand, 9199317 - 9199362
Alignment:
Q  203 agaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    ||||||||| ||||  |||||||||||||||||| |||||||||||    
T  9199317 agaaattgaaaaaactctctaaaatattattgaaagaataaaagtt 9199362  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 8931287 - 8931220
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    ||||| |||||||||| ||||||||||||| || ||||||| |||||| ||| || ||||||| |||||    
T  8931287 gttagcaagcgctaaacctagattgaaaaa-aacaagtttgcaagcgataaacttgtgaaaatagggtt 8931220  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 57; Significance: 7e-24; HSPs: 25)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 24840201 - 24840077
Alignment:
Q  132 gctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatta 231  Q
    |||||| ||||||||||||  || ||||||| |||||||||| || ||||||| |||||  | |||| |||||||||||||||||  |||||||||||||    
T  24840201 gctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaactctctaaaatatta 24840102  T
Q  232 ttgaatgaataaaagttgtctctta 256  Q
    || ||| ||||||||||| ||||||    
T  24840101 ttcaataaataaaagttgcctctta 24840077  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 1369867 - 1369739
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||| |||| ||||||||||||  || ||||||| |||||| ||| || | ||||| |||||  | |||| |||||||||||||||||  || ||||||    
T  1369867 aagcgttaaacctagattgaaaagaaacaagtttgcaagcgataaacttgttaaaatagggttccggaatccaccagaaattgagaaaactctataaaat 1369768  T
Q  228 attattgaatgaataaaagttgtctctta 256  Q
    |||||||||| ||||||||||||||||||    
T  1369767 attattgaattaataaaagttgtctctta 1369739  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 166 - 256
Target Start/End: Original strand, 1690196 - 1690286
Alignment:
Q  166 gcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||||||| || ||||||| ||||| || |||| | |||||||||||||||| |||||||||| |||| ||||||||||||||||||||||    
T  1690196 gcgacaaatttgtgaaaatagggttctggaatccatcagaaattgagaaaattctctaaaatagtatttaatgaataaaagttgtctctta 1690286  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 51; E-Value: 3e-20
Query Start/End: Original strand, 11 - 81
Target Start/End: Original strand, 29138398 - 29138468
Alignment:
Q  11 aaaggacttgactgccatacatgaagttctcgaaaatattggctataaagaatatgatggggtggcaaatg 81  Q
    ||||||||||||||||||||| |||||||||||||||||||| ||||||||  ||||||| ||||||||||    
T  29138398 aaaggacttgactgccatacacgaagttctcgaaaatattggttataaagatgatgatggagtggcaaatg 29138468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 128 - 257
Target Start/End: Original strand, 11000853 - 11000982
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| ||||||||||||  || ||||| | |||||||||| |  ||||||| |||||  | |||| ||||||||||| |||||  |||||||||    
T  11000853 aagcgctaaacctagattgaaaagaaacaagttcgcaagcgacaaactagtgaaaatagggttcaggaatccaccagaaattgggaaaactctctaaaat 11000952  T
Q  228 attattgaatgaataaaagttgtctcttaa 257  Q
    |||||||||||||||| | ||| |||||||    
T  11000953 attattgaatgaataataattgcctcttaa 11000982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 1365733 - 1365606
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaa 226  Q
    |||||||||| |||||||||||  ||| ||||||||||||||  || || ||||||| |||||    |||| |||| |||||||||||| | ||||||||    
T  1365733 aagcgctaaacctagattgaaag-gaacaagtttgtaagcgatgaacttgtgaaaatagggttccataatccaccaaaaattgagaaaaactctctaaaa 1365635  T
Q  227 tattattgaatgaataaaagttgtctctt 255  Q
    ||||||||||||||||||||||| |||||    
T  1365634 tattattgaatgaataaaagttgcctctt 1365606  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 256
Target Start/End: Original strand, 6451777 - 6451905
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||||||||||||||||||||   || ||||||| ||||||||||  | |||||||  ||||  | |||| | || ||||||| ||||  |||||||||    
T  6451777 aagcgctaaatctagattgaaaggaaacaagtttgcaagcgacaaacctgtgaaaataaggtttcggaatccaacaaaaattgaaaaaactctctaaaat 6451876  T
Q  228 attattgaatgaataaaagttgtctctta 256  Q
    |||||||||||||| ||||||||||||||    
T  6451877 attattgaatgaattaaagttgtctctta 6451905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 8916404 - 8916524
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||| |||| ||||||| |||| ||| ||||||| || ||| ||| || || |||| | ||| || |||| |||||||||||||||||  |||||||||    
T  8916404 aagcgttaaacctagatttaaaatgaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaactctctaaaat 8916503  T
Q  228 attattgaatgaataaaagtt 248  Q
    |||||||||||||||||||||    
T  8916504 attattgaatgaataaaagtt 8916524  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 132 - 256
Target Start/End: Complemental strand, 11229039 - 11228915
Alignment:
Q  132 gctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatta 231  Q
    |||||| |||||||||||||||| ||||||| | ||||||||  | ||||||  |||||    |||| |||||||||||| ||||  |||||||||||||    
T  11229039 gctaaacctagattgaaaaagaacaagtttgcaggcgacaaacgtgtgaaaaaagggttccagaatccaccagaaattgataaaactctctaaaatatta 11228940  T
Q  232 ttgaatgaataaaagttgtctctta 256  Q
    |||| ||||||||||||| ||||||    
T  11228939 ttgagtgaataaaagttgcctctta 11228915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 133 - 257
Target Start/End: Complemental strand, 35814927 - 35814804
Alignment:
Q  133 ctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattat 232  Q
    ||||||||||||||||| | |  || |||| |||||||||| || | |||||  |||| |  ||||||||| ||||||||||||  ||||||||||||||    
T  35814927 ctaaatctagattgaaaga-accaactttgcaagcgacaaacttgtaaaaataaggttcttgaatctaccataaattgagaaaactctctaaaatattat 35814829  T
Q  233 tgaatgaataaaagttgtctcttaa 257  Q
    ||||||||||||||| |||||||||    
T  35814828 tgaatgaataaaagtcgtctcttaa 35814804  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 249
Target Start/End: Original strand, 27309636 - 27309763
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctc 221  Q
    ||||| |||||||||| ||||||||||||  || ||||||| |||||||||| || ||||||| ||||| |  ||||| ||| ||||| ||||||  |||    
T  27309636 gttagcaagcgctaaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttctctaatctgccaaaaattaagaaaactctc 27309735  T
Q  222 taaaatattattgaatgaataaaagttg 249  Q
     |||| |||||| |||||||||||||||    
T  27309736 caaaaaattatttaatgaataaaagttg 27309763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 245
Target Start/End: Complemental strand, 5934666 - 5934549
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| ||||||||||||  || || |||| |||||||||| || ||||||| || ||    |||| |  ||||||||||||||| |||||||||    
T  5934666 aagcgctaaacctagattgaaaagaaacaaatttgcaagcgacaaacttgtgaaaataggatttcagaatccattagaaattgagaaaattctctaaaat 5934567  T
Q  228 attattgaatgaataaaa 245  Q
    ||||||||||||||||||    
T  5934566 attattgaatgaataaaa 5934549  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 267
Target Start/End: Complemental strand, 27142722 - 27142589
Alignment:
Q  134 taaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtta-tgaaatctaccagaaattgagaaaatcctctaaaatattat 232  Q
    |||| ||||||||||||  || ||||||| |||||||||| || ||||||| |||||  ||||| | |||||||||||||||||  |||| |||||||||    
T  27142722 taaacctagattgaaaagaaacaagtttgcaagcgacaaacttgtgaaaatagggttcctgaaacc-accagaaattgagaaaactctctgaaatattat 27142624  T
Q  233 tgaatgaataaaagttgtctcttaaacaacaattg 267  Q
    | ||| ||||||||||  ||||||| | |||||||    
T  27142623 tcaattaataaaagttccctcttaacctacaattg 27142589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 30217875 - 30217755
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctct--aaa 225  Q
    |||||||||| |||||||||||  ||| ||||| | |||||||||| || ||||||| | ||| ||||||| ||||| |||||||| ||  ||||  |||    
T  30217875 aagcgctaaacctagattgaaa--gaacaagttcgcaagcgacaaacttgtgaaaatagagttctgaaatccaccagtaattgagataacactctctaaa 30217778  T
Q  226 atattattgaatgaataaaagtt 248  Q
    |||||||||| ||||||||||||    
T  30217777 atattattgattgaataaaagtt 30217755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 203 - 257
Target Start/End: Original strand, 8063898 - 8063952
Alignment:
Q  203 agaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctcttaa 257  Q
    ||||||||||||||| ||||||||||||||||||| |||||||| || |||||||    
T  8063898 agaaattgagaaaattctctaaaatattattgaattaataaaagatgcctcttaa 8063952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 123 - 248
Target Start/End: Complemental strand, 1786750 - 1786625
Alignment:
Q  123 ttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctct 222  Q
    |||| ||| |||||| |||||| |||||| || ||||||| ||||||||||  |  |||||| |||||    |||| | ||||||||| |||||  ||||    
T  1786750 ttagcaagtgctaaacctagatagaaaaataacaagtttgcaagcgacaaacatgcgaaaatagggttccagaatccatcagaaattgcgaaaactctct 1786651  T
Q  223 aaaatattattgaatgaataaaagtt 248  Q
    ||||||||||| ||||||||||||||    
T  1786650 aaaatattatttaatgaataaaagtt 1786625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 203 - 256
Target Start/End: Original strand, 4955966 - 4956019
Alignment:
Q  203 agaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    ||||||||||||||  | |||||||||||||||||||||||||| || ||||||    
T  4955966 agaaattgagaaaactccctaaaatattattgaatgaataaaagatgactctta 4956019  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 195 - 254
Target Start/End: Complemental strand, 2767926 - 2767866
Alignment:
Q  195 aatctaccagaaattgagaaaatc-ctctaaaatattattgaatgaataaaagttgtctct 254  Q
    |||| ||||||||||||||||| | ||||||||||||||| | |||||||||||| |||||    
T  2767926 aatccaccagaaattgagaaaaactctctaaaatattattaattgaataaaagttatctct 2767866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 202 - 245
Target Start/End: Original strand, 1785499 - 1785541
Alignment:
Q  202 cagaaattgagaaaatcctctaaaatattattgaatgaataaaa 245  Q
    |||||||||||||||| || ||||||||||||||||||||||||    
T  1785499 cagaaattgagaaaattct-taaaatattattgaatgaataaaa 1785541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 3778736 - 3778861
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgaga------aaatcctc 221  Q
    |||| |||||| ||||||||||  ||| ||||||| |||||| ||| || ||||||| |||||  | |||| ||||||||||||||      |||  |||    
T  3778736 aagcactaaatatagattgaaat-gaacaagtttgcaagcgagaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaattaaactctc 3778834  T
Q  222 taaaatattattgaatgaataaaagtt 248  Q
    |||||||||||||| ||||||||||||    
T  3778835 taaaatattattgattgaataaaagtt 3778861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 4133398 - 4133444
Alignment:
Q  210 gagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||||||  |||||||||||||||||||||||| |||||| ||||||    
T  4133398 gagaaaactctctaaaatattattgaatgaatataagttgcctctta 4133444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 148 - 248
Target Start/End: Original strand, 4888732 - 4888833
Alignment:
Q  148 aaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaatattattgaatgaataaaag 246  Q
    ||||||| ||||||| ||||||||||  | ||||||| | |||  | |||  |||||||||||| |||  | ||||||||||||||||| ||||||||||    
T  4888732 aaaagaacaagtttgcaagcgacaaacctgtgaaaatagagttccggaattcaccagaaattgaaaaacactctctaaaatattattgattgaataaaag 4888831  T
Q  247 tt 248  Q
    ||    
T  4888832 tt 4888833  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 156 - 248
Target Start/End: Complemental strand, 11228755 - 11228662
Alignment:
Q  156 aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaa-ttgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    ||||||| |||||||||| || || |||| ||||| |  |||| |||||||| |||||||||  ||||||||||||| ||| ||| ||||||||    
T  11228755 aagtttggaagcgacaaacttgtggaaatagggttctagaatccaccagaaaattgagaaaactctctaaaatattagtgattgattaaaagtt 11228662  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 240
Target Start/End: Original strand, 18790266 - 18790311
Alignment:
Q  195 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaa 240  Q
    |||| |||||||||||||||||  ||||||||||||| ||||||||    
T  18790266 aatccaccagaaattgagaaaactctctaaaatattactgaatgaa 18790311  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 205 - 256
Target Start/End: Original strand, 19404213 - 19404265
Alignment:
Q  205 aaattgagaaaatcctctaaaatatt-attgaatgaataaaagttgtctctta 256  Q
    ||||||| ||||  |||||||||||| ||||||||||||||||||| ||||||    
T  19404213 aaattgaaaaaactctctaaaatatttattgaatgaataaaagttgcctctta 19404265  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 57; Significance: 7e-24; HSPs: 15)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 123 - 257
Target Start/End: Complemental strand, 32361434 - 32361301
Alignment:
Q  123 ttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctc 221  Q
    |||| ||||| |||||||||||||||||  |||  ||||| |||||| |||||| | |||||  ||||  | ||||||| |||||||||||||| | |||    
T  32361434 ttagcaagcgttaaatctagattgaaaagaaat--gtttgcaagcgataaaattgtaaaaataaggttccggaatctacgagaaattgagaaaaactctc 32361337  T
Q  222 taaaatattattgaatgaataaaagttgtctcttaa 257  Q
    ||||||||||||||||||||||||||||||||||||    
T  32361336 taaaatattattgaatgaataaaagttgtctcttaa 32361301  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 122 - 256
Target Start/End: Complemental strand, 11658999 - 11658865
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ct 220  Q
    ||||| |||| ||||| |||||||||||| ||| || |||| |||||| ||| || ||||||| | ||| || |||| |||| |||||||||||| | ||    
T  11658999 gttagcaagcactaaacctagattgaaaa-gaacaaatttgcaagcgataaacttgtgaaaatagagttttggaatccaccaaaaattgagaaaaactct 11658901  T
Q  221 ctaaaatattattgaatgaataaaagttgtctctta 256  Q
    ||||||||||||||| |||||||||||| |||||||    
T  11658900 ctaaaatattattgattgaataaaagttttctctta 11658865  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 131 - 246
Target Start/End: Original strand, 27822148 - 27822264
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaatat 229  Q
    ||||||| ||| || ||||| ||| ||||||  |||||||||| || ||||||  |||||  |||||| ||||||||||||||||| | |||||||||||    
T  27822148 cgctaaacctaaatagaaaaggaacaagttttcaagcgacaaacttgtgaaaacagggttccgaaatccaccagaaattgagaaaaactctctaaaatat 27822247  T
Q  230 tattgaatgaataaaag 246  Q
    |||||| ||||||||||    
T  27822248 tattgattgaataaaag 27822264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 129 - 256
Target Start/End: Complemental strand, 1127315 - 1127188
Alignment:
Q  129 agcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaata 228  Q
    ||||||||| ||||||| ||||  || ||||||| |||||||||| || ||||||| | |||  | |||  |||| ||||||||||||  ||||||||||    
T  1127315 agcgctaaacctagattaaaaagaaacaagtttgcaagcgacaaatttgtgaaaatagtgtttcggaatacaccaaaaattgagaaaactctctaaaata 1127216  T
Q  229 ttattgaatgaataaaagttgtctctta 256  Q
     |||||||||||||||| |||| |||||    
T  1127215 atattgaatgaataaaaattgtatctta 1127188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 164 - 245
Target Start/End: Complemental strand, 12882149 - 12882067
Alignment:
Q  164 aagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaatattattgaatgaataaaa 245  Q
    |||||||||| || ||||||| |||||  | |||| ||||||||||||||||| | |||||||||||||||||||||||||||    
T  12882149 aagcgacaaacttgtgaaaatagggtttcggaatccaccagaaattgagaaaaactctctaaaatattattgaatgaataaaa 12882067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 146 - 256
Target Start/End: Original strand, 24443116 - 24443226
Alignment:
Q  146 gaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaa 245  Q
    ||||||||| | | ||| |||||||||| |||| ||||| |||||    |||| |||||||||| ||||||  ||||  |||||||||||||||||||||    
T  24443116 gaaaaagaacaggcttgcaagcgacaaacttataaaaatagggttccagaatcaaccagaaattaagaaaactctctgcaatattattgaatgaataaaa 24443215  T
Q  246 gttgtctctta 256  Q
    ||| |||||||    
T  24443216 gttatctctta 24443226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 187 - 256
Target Start/End: Original strand, 34373872 - 34373941
Alignment:
Q  187 ggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    ||||||| |||| |||||||||||||||||  |||||||||||||||||||||  ||||| || ||||||    
T  34373872 ggttatggaatccaccagaaattgagaaaactctctaaaatattattgaatgatcaaaagctgcctctta 34373941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 193 - 248
Target Start/End: Original strand, 18727937 - 18727992
Alignment:
Q  193 gaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    |||||| |||||||||||||||||  ||||||||||| ||||| ||||||||||||    
T  18727937 gaaatccaccagaaattgagaaaactctctaaaatataattgattgaataaaagtt 18727992  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 156 - 249
Target Start/End: Original strand, 12778454 - 12778548
Alignment:
Q  156 aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctcta-aaatattattgaatgaataaaagttg 249  Q
    ||||||| |||||| ||  || |||||||  |||| || ||||||||||||||||||||||  ||||| |||  |||||||||||||||||||||    
T  12778454 aagtttgcaagcgataatcttgtgaaaataaggttctggaatctaccagaaattgagaaaaaactctataaaatttattgaatgaataaaagttg 12778548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 233
Target Start/End: Original strand, 33615531 - 33615636
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||| ||| |||||| ||||||||| ||||||| |||||||||| || ||||||| |||||    |||  |||| ||||||| ||||  |||||||||    
T  33615531 aagcgcaaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtttcagaattcaccataaattgaaaaaactctctaaaat 33615630  T
Q  228 attatt 233  Q
    ||||||    
T  33615631 attatt 33615636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 3542312 - 3542245
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    ||||| |||||||||| |||||| ||||| ||| |||||||||||||||||| || ||||||| |||||    
T  3542312 gttagcaagcgctaaacctagatagaaaa-gaacaagtttgtaagcgacaaacttgtgaaaatagggtt 3542245  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 133 - 264
Target Start/End: Complemental strand, 24664321 - 24664190
Alignment:
Q  133 ctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattat 232  Q
    ||||||||| ||||||||  || ||||||| |||||| |||| | | |||||  ||||  |||||| |||| | ||| ||||||  |||| |||||||||    
T  24664321 ctaaatctatattgaaaataaaaaagtttgcaagcgataaaaatgtaaaaataaggtttcgaaatccaccaaagattaagaaaactctctgaaatattat 24664222  T
Q  233 tgaatgaataaaagttgtctcttaaacaacaa 264  Q
    | ||||||||||| |||| ||| |||| ||||    
T  24664221 taaatgaataaaaattgtttctcaaactacaa 24664190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 122 - 184
Target Start/End: Complemental strand, 30052270 - 30052209
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaat 184  Q
    |||||||||||||||| |||||| | ||||||| ||||||| |||||||||| || |||||||    
T  30052270 gttagaaagcgctaaacctagatag-aaaagaacaagtttgcaagcgacaaacttgtgaaaat 30052209  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 222 - 267
Target Start/End: Original strand, 3814500 - 3814545
Alignment:
Q  222 taaaatattattgaatgaataaaagttgtctcttaaacaacaattg 267  Q
    ||||||||||||||||||||| || |||||||||| || |||||||    
T  3814500 taaaatattattgaatgaatacaaattgtctcttagactacaattg 3814545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 14216882 - 14216837
Alignment:
Q  203 agaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    ||||||||||||||  |||| |||||||||||||| ||||||||||    
T  14216882 agaaattgagaaaactctctgaaatattattgaataaataaaagtt 14216837  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 7e-24; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 7e-24
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 13991406 - 13991526
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||||||||||||||||  || ||||||| ||||||||||  |  ||||||  |||| || |||| ||||||| |||||||||  |||||||||    
T  13991406 aagcgctaaatctagattgaaaagaaacaagtttgcaagcgacaaacatgcgaaaataaggttctggaatccaccagaatttgagaaaactctctaaaat 13991505  T
Q  228 attattgaatgaataaaagtt 248  Q
    |||||||||||||||||||||    
T  13991506 attattgaatgaataaaagtt 13991526  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 7634142 - 7634022
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||| |||| |||||||||||| ||| ||||||| || ||| ||| || || |||| | ||| || |||| |||||||||||||||||  |||||||||    
T  7634142 aagcgttaaacctagattgaaaaggaacaagtttgcaaacgataaacttgtggaaatagagttctggaatccaccagaaattgagaaaactctctaaaat 7634043  T
Q  228 attattgaatgaataaaagtt 248  Q
    |||||||||||||||||||||    
T  7634042 attattgaatgaataaaagtt 7634022  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 132 - 256
Target Start/End: Original strand, 21433594 - 21433718
Alignment:
Q  132 gctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatta 231  Q
    |||||| |||||| ||||||||| || || | |||||||||| |||||||||| |||||    |||  | || ||||||||||||| |||||||||||||    
T  21433594 gctaaacctagatagaaaaagaacaaattcgcaagcgacaaacttatgaaaatagggttccagaattcatcataaattgagaaaattctctaaaatatta 21433693  T
Q  232 ttgaatgaataaaagttgtctctta 256  Q
    |||||||||||||| ||||||||||    
T  21433694 ttgaatgaataaaacttgtctctta 21433718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 134 - 258
Target Start/End: Original strand, 38888023 - 38888147
Alignment:
Q  134 taaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattatt 233  Q
    |||| ||||||||||||  || || |||| |||||||||| || ||||||| |||||  | |||| |  ||||||||||||||| |||||||||||  ||    
T  38888023 taaacctagattgaaaataaacaaatttgcaagcgacaaacttgtgaaaatagggtttcggaatccattagaaattgagaaaattctctaaaatatggtt 38888122  T
Q  234 gaatgaataaaagttgtctcttaaa 258  Q
    |||||||||||||||| ||||||||    
T  38888123 gaatgaataaaagttgactcttaaa 38888147  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 40206210 - 40206082
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa-tcctctaaaa 226  Q
    |||||||||||||| ||||||| |||  ||||| | |||||||||| || ||||||| | |||  | |||  ||||||||||||||||| | ||||||||    
T  40206210 aagcgctaaatctaaattgaaagagac-aagttcgcaagcgacaaacttgtgaaaatagtgtttcggaattcaccagaaattgagaaaaattctctaaaa 40206112  T
Q  227 tattattgaatgaataaaagttgtctctta 256  Q
    ||||||||||||||||||| || |||||||    
T  40206111 tattattgaatgaataaaaattatctctta 40206082  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 156 - 247
Target Start/End: Original strand, 13990732 - 13990823
Alignment:
Q  156 aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagt 247  Q
    ||||||| |||  ||||| || ||||||| ||||| || |||| | |||||||||| ||||  |||||||||||||||||||||||||||||    
T  13990732 aagtttgcaagtaacaaacttgtgaaaatagggttctggaatccatcagaaattgaaaaaactctctaaaatattattgaatgaataaaagt 13990823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 124 - 239
Target Start/End: Original strand, 18689544 - 18689659
Alignment:
Q  124 tagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctcta 223  Q
    |||| ||||||||| ||||||||||||  || ||||||| | |||||||| || | ||||| |||||    |||| |||||||||||||||||  || ||    
T  18689544 tagagagcgctaaacctagattgaaaagaaaaaagtttgcatgcgacaaacttgtaaaaatagggttgcagaatccaccagaaattgagaaaactctata 18689643  T
Q  224 aaatattattgaatga 239  Q
    ||||||||||||||||    
T  18689644 aaatattattgaatga 18689659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 200 - 245
Target Start/End: Complemental strand, 10494893 - 10494848
Alignment:
Q  200 accagaaattgagaaaatcctctaaaatattattgaatgaataaaa 245  Q
    |||||||||||||||||  |||||||||||||||||||||||||||    
T  10494893 accagaaattgagaaaactctctaaaatattattgaatgaataaaa 10494848  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 19935529 - 19935428
Alignment:
Q  148 aaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgag-aaaatcctctaaaatattattgaatgaataaaag 246  Q
    |||| ||||| |||| |||||||||| |||||||||| |||||||| |||  | || |||||||| ||||| ||||||||||  ||||| ||||||||||    
T  19935529 aaaaaaataaatttgcaagcgacaaacttatgaaaatagggttatggaattcatcaaaaattgagaaaaattctctaaaataacattgattgaataaaag 19935430  T
Q  247 tt 248  Q
    ||    
T  19935429 tt 19935428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 6659352 - 6659419
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    ||||| ||||||||||||||||| | ||||||| ||||||| |||||||||| || ||||||| |||||    
T  6659352 gttagcaagcgctaaatctagatag-aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 6659419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 131 - 234
Target Start/End: Complemental strand, 15848463 - 15848361
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatatt 230  Q
    ||||||||||||||||||||  || ||||| | ||| ||||||||| ||||||  | |||  |||||| |||| ||||||||||||  |||||||||| |    
T  15848463 cgctaaatctagattgaaaagaaacaagtt-gcaagtgacaaaattgtgaaaagagagttccgaaatccaccaaaaattgagaaaactctctaaaatact 15848365  T
Q  231 attg 234  Q
    ||||    
T  15848364 attg 15848361  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 210 - 256
Target Start/End: Original strand, 17255007 - 17255053
Alignment:
Q  210 gagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||||||  |||||||||||||||||||||||| |||||| ||||||    
T  17255007 gagaaaactctctaaaatattattgaatgaatataagttgcctctta 17255053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 205 - 247
Target Start/End: Complemental strand, 28897955 - 28897913
Alignment:
Q  205 aaattgagaaaatcctctaaaatattattgaatgaataaaagt 247  Q
    ||||||||||||  || ||||||||||||||||||||||||||    
T  28897955 aaattgagaaaagtctttaaaatattattgaatgaataaaagt 28897913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 3765306 - 3765355
Alignment:
Q  200 accagaaattgagaaaatcctctaaaatattattgaatgaataaaagttg 249  Q
    |||| ||||||||||||  ||| ||||||||||||||| |||||||||||    
T  3765306 accaaaaattgagaaaactctcaaaaatattattgaataaataaaagttg 3765355  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 195 - 248
Target Start/End: Complemental strand, 9260568 - 9260515
Alignment:
Q  195 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    |||| |||||||||||||||||   |||||||||| ||||||||||||| ||||    
T  9260568 aatccaccagaaattgagaaaactatctaaaatataattgaatgaataatagtt 9260515  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 227 - 256
Target Start/End: Original strand, 50519405 - 50519434
Alignment:
Q  227 tattattgaatgaataaaagttgtctctta 256  Q
    ||||||||||||||||||||||||||||||    
T  50519405 tattattgaatgaataaaagttgtctctta 50519434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 53; Significance: 2e-21; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 244
Target Start/End: Original strand, 15092 - 15207
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| ||||||||||| |||  |||||  |||||||| || || | ||||| ||||| |  |||| ||||||||||||||||||||||||||||    
T  15092 aagcgctaaaactagattgaaagagac-aagttcctaagcgacgaacttgtaaaaatagggttctagaatccaccagaaattgagaaaatcctctaaaat 15190  T
Q  228 attattgaatgaataaa 244  Q
    |||||||||||||||||    
T  15191 attattgaatgaataaa 15207  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 53; Significance: 2e-21; HSPs: 19)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 129 - 245
Target Start/End: Complemental strand, 2687803 - 2687687
Alignment:
Q  129 agcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaata 228  Q
    ||||||||| |||||| ||||||||| ||||||| |||||||||| || ||||||| ||||| |  |||| || ||||||||||||||  || | |||||    
T  2687803 agcgctaaacctagatagaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttctagaatccacaagaaattgagaaaactctttgaaata 2687704  T
Q  229 ttattgaatgaataaaa 245  Q
    |||||||||||||||||    
T  2687703 ttattgaatgaataaaa 2687687  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 24731094 - 24730974
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||||||||| ||||||||||| ||| ||||||| |||| ||||| || ||||||| || ||  | |||| | || ||||||||||||  |||||||||    
T  24731094 aagcgctaaatttagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaataggatttcggaatccatcaaaaattgagaaaactctctaaaat 24730995  T
Q  228 attattgaatgaataaaagtt 248  Q
    |||||||||||||||||||||    
T  24730994 attattgaatgaataaaagtt 24730974  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 52; E-Value: 7e-21
Query Start/End: Original strand, 128 - 267
Target Start/End: Complemental strand, 14130227 - 14130088
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||| ||||||||||| |||||   | ||||||| |||||| ||| || |||||||  ||||  | |||| |||||||||||||||||  ||| |||||    
T  14130227 aagcgttaaatctagatcgaaaagagacaagtttgcaagcgataaatttgtgaaaataaggttccggaatccaccagaaattgagaaaactctccaaaat 14130128  T
Q  228 attattgaatgaataaaagttgtctcttaaacaacaattg 267  Q
    |||||||||||||||||||||| |||||| || |||||||    
T  14130127 attattgaatgaataaaagttgcctcttagactacaattg 14130088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 178 - 256
Target Start/End: Complemental strand, 16598178 - 16598100
Alignment:
Q  178 tgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    ||||||| |||||  |||||  |||||||| ||||||||  ||||||||||||||||||||||||||||||||||||||    
T  16598178 tgaaaatagggttccgaaatacaccagaaactgagaaaactctctaaaatattattgaatgaataaaagttgtctctta 16598100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 186 - 248
Target Start/End: Complemental strand, 30440741 - 30440679
Alignment:
Q  186 gggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    ||||| ||||||| |||||||||||||||||  ||||||||||||||||||||||||||||||    
T  30440741 gggttctgaaatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagtt 30440679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 2188374 - 2188490
Alignment:
Q  134 taaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaatt--gagaaaatcctctaaaatatta 231  Q
    |||| ||| ||| ||||||| | |||||| ||||||||||||| | ||||| ||||| ||||||| ||||||||||  || ||||  |||||||||||||    
T  2188374 taaacctatattaaaaaagatttagtttgcaagcgacaaaattgtaaaaatagggttctgaaatccaccagaaattaagaaaaaactctctaaaatatta 2188473  T
Q  232 ttgaatgaataaaagtt 248  Q
    |||| ||||||||||||    
T  2188474 ttgattgaataaaagtt 2188490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 248
Target Start/End: Complemental strand, 26374950 - 26374842
Alignment:
Q  139 ctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatg 238  Q
    |||||||||||| ||| ||||| | |||||||||| || | ||||| |||||  |||||| |||||||||| ||||||  ||||||| ||||||||||||    
T  26374950 ctagattgaaaa-gaacaagttcgcaagcgacaaacttgtaaaaatagggtttcgaaatccaccagaaattaagaaaactctctaaattattattgaatg 26374852  T
Q  239 aataaaagtt 248  Q
    ||||||||||    
T  26374851 aataaaagtt 26374842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 2189749 - 2189868
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| || ||||||||| ||| ||||||| |||||||||| || |||||||  |||| || |||| |||| ||| ||||||||  ||||||| |    
T  2189749 aagcgctaaacctcgattgaaaa-gaacaagtttgcaagcgacaaacttgtgaaaataaggttttggaatccaccaaaaaatgagaaaaaactctaaagt 2189847  T
Q  228 attattgaatgaataaaagtt 248  Q
    |||||||| ||||||||||||    
T  2189848 attattgattgaataaaagtt 2189868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 178 - 256
Target Start/End: Original strand, 24577605 - 24577683
Alignment:
Q  178 tgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    ||||||| |||||  | |||| |||||||||||||||||  |||||||||||||||||||||||||||| || ||||||    
T  24577605 tgaaaatggggtttcgtaatccaccagaaattgagaaaactctctaaaatattattgaatgaataaaagctgcctctta 24577683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 123 - 249
Target Start/End: Original strand, 24578799 - 24578925
Alignment:
Q  123 ttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctct 222  Q
    ||||||||||||||| |||||| |||||  || ||||||| |||||  |||  | ||||||| ||||| || |||| || |||||||| |||||  ||||    
T  24578799 ttagaaagcgctaaacctagatcgaaaagaaacaagtttgcaagcggtaaatctgtgaaaatagggttctggaatccactagaaattgtgaaaactctct 24578898  T
Q  223 aaaatattattgaatgaataaaagttg 249  Q
    ||||||||||| ||| |||||||||||    
T  24578899 aaaatattatttaataaataaaagttg 24578925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 122 - 254
Target Start/End: Complemental strand, 16598317 - 16598184
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccag-aaattgagaaaatcct 220  Q
    ||||| ||||||||||  ||||||  |||  || ||||||| | |||||||| || ||||||| |||||   ||||  ||||| ||||||||||||  ||    
T  16598317 gttagcaagcgctaaacttagattagaaagaaacaagtttgcacgcgacaaacttgtgaaaatagggttccaaaatacaccagtaaattgagaaaactct 16598218  T
Q  221 ctaaaatattattgaatgaataaaagttgtctct 254  Q
    ||||||||||||||||||||||||||||| ||||    
T  16598217 ctaaaatattattgaatgaataaaagttgcctct 16598184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 134 - 248
Target Start/End: Complemental strand, 20693855 - 20693741
Alignment:
Q  134 taaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattatt 233  Q
    |||| ||||||||||||  || ||||||| |||||||||| || |||||||  ||||  | |||| | |||||||||||||||  ||||||| |||||||    
T  20693855 taaacctagattgaaaataaacaagtttgcaagcgacaaatttgtgaaaatatggttccggaatccatcagaaattgagaaaactctctaaagtattatt 20693756  T
Q  234 gaatgaataaaagtt 248  Q
    |||  ||||||||||    
T  20693755 gaagtaataaaagtt 20693741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 203 - 248
Target Start/End: Complemental strand, 26378018 - 26377973
Alignment:
Q  203 agaaattgagaaaatcctctaaaatattattgaatgaataaaagtt 248  Q
    ||||||||||||||  ||||||||||||||||||||||||||||||    
T  26378018 agaaattgagaaaactctctaaaatattattgaatgaataaaagtt 26377973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 229
Target Start/End: Complemental strand, 24731289 - 24731188
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    |||||||||| |||||||||||| ||| ||||||| |||| ||||| || ||||||| | |||  | |||  | |||||||||||||||  |||||||||    
T  24731289 aagcgctaaacctagattgaaaaggaacaagtttgcaagcaacaaacttgtgaaaatagagtttcggaattcatcagaaattgagaaaactctctaaaat 24731190  T
Q  228 at 229  Q
    ||    
T  24731189 at 24731188  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 22921872 - 22921939
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    ||||| |||||||||| |||||| ||||| ||||||||||| |||||||||| || ||||||| |||||    
T  22921872 gttagcaagcgctaaacctagatagaaaa-gaataagtttgcaagcgacaaacttgtgaaaatagggtt 22921939  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 122 - 190
Target Start/End: Original strand, 22926670 - 22926737
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    |||||||||||||||| |||||| | ||||||| ||||||| |||||||||| || ||||||| |||||    
T  22926670 gttagaaagcgctaaacctagatag-aaaagaacaagtttgcaagcgacaaacttgtgaaaatagggtt 22926737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 156 - 246
Target Start/End: Original strand, 2609550 - 2609640
Alignment:
Q  156 aagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaag 246  Q
    ||||||| ||| |||||| || ||||||| ||||||   |||  |||||||||||| |||   |||| |||||||||||||||||||||||    
T  2609550 aagtttgcaagtgacaaacttgtgaaaatagggttacagaattcaccagaaattgataaagctctctgaaatattattgaatgaataaaag 2609640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 200 - 249
Target Start/End: Original strand, 10629217 - 10629266
Alignment:
Q  200 accagaaattgagaaaatcctctaaaatattattgaatgaataaaagttg 249  Q
    |||| |||||||||||||  |||||||||||||| || ||||||||||||    
T  10629217 accaaaaattgagaaaattttctaaaatattatttaacgaataaaagttg 10629266  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 122 - 190
Target Start/End: Complemental strand, 37189933 - 37189866
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggtt 190  Q
    ||||| |||| ||||| |||||| ||||| ||||||||||| |||||||||| || ||||||| |||||    
T  37189933 gttagcaagctctaaaactagatagaaaa-gaataagtttgcaagcgacaaacttgtgaaaatagggtt 37189866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 53; Significance: 2e-21; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 128 - 255
Target Start/End: Complemental strand, 492629 - 492501
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaa 226  Q
    ||||||||||| |||||||||||  || ||||||| |||||||||| || |||| || |||||  | |||| |||||||||| |||||| | |||| |||    
T  492629 aagcgctaaatttagattgaaaagaaacaagtttgcaagcgacaaacttgtgaagatagggtttcggaatcaaccagaaattaagaaaaactctctgaaa 492530  T
Q  227 tattattgaatgaataaaagttgtctctt 255  Q
    ||||||| |||||||||||||||||||||    
T  492529 tattattaaatgaataaaagttgtctctt 492501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 128 - 256
Target Start/End: Complemental strand, 18252478 - 18252350
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaat 227  Q
    ||||| |||| |||||| |||| |||| ||||||| ||||||||||  | ||||||| ||||| |  |||| || ||||||||||||||  || ||||||    
T  18252478 aagcgttaaacctagatagaaatagaacaagtttgcaagcgacaaacctgtgaaaatagggttctataatccactagaaattgagaaaactctttaaaat 18252379  T
Q  228 attattgaatgaataaaagttgtctctta 256  Q
    ||||||||||||||| ||||| |||||||    
T  18252378 attattgaatgaatagaagttatctctta 18252350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 122 - 235
Target Start/End: Complemental strand, 26140411 - 26140298
Alignment:
Q  122 gttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctc 221  Q
    ||||| || ||||||||||||||||||| | || ||| ||| |||||||||| |||||||||| |||||    |||| |||| ||||||||||||  |||    
T  26140411 gttagcaaacgctaaatctagattgaaagaaaacaagattgcaagcgacaaacttatgaaaatagggttcaagaatccaccaaaaattgagaaaactctc 26140312  T
Q  222 taaaatattattga 235  Q
    ||||||||||||||    
T  26140311 taaaatattattga 26140298  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 123 - 237
Target Start/End: Original strand, 19497326 - 19497441
Alignment:
Q  123 ttagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgag-aaaatcctc 221  Q
    |||| ||||||||||| ||||   |||||||| ||||||| |||||||||| || ||||||| |||||  |||||| | || |||||||| ||||  |||    
T  19497326 ttagcaagcgctaaatgtagaaaaaaaaagaacaagtttgcaagcgacaaacttgtgaaaatagggttccgaaatccatcaaaaattgagaaaaaatctc 19497425  T
Q  222 taaaatattattgaat 237  Q
    ||||||||||||||||    
T  19497426 taaaatattattgaat 19497441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054 (Bit Score: 49; Significance: 4e-19; HSPs: 2)
Name: scaffold0054
Description:

Target: scaffold0054; HSP #1
Raw Score: 49; E-Value: 4e-19
Query Start/End: Original strand, 124 - 256
Target Start/End: Complemental strand, 37776 - 37646
Alignment:
Q  124 tagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctcta 223  Q
    |||||||||||||| |||||||||||| ||| ||||||| |||||||||| |||||||||| || ||   ||||| ||||||||||  |||||  |||||    
T  37776 tagaaagcgctaaacctagattgaaaa-gaacaagtttgcaagcgacaaacttatgaaaatagg-ttccaaaatcgaccagaaattaggaaaactctcta 37679  T
Q  224 aaatattattgaatgaataaaagttgtctctta 256  Q
    |||||| ||| ||||||||| ||||| ||||||    
T  37678 aaatataattaaatgaataacagttgcctctta 37646  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0054; HSP #2
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 124 - 248
Target Start/End: Complemental strand, 49387 - 49264
Alignment:
Q  124 tagaaagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctcta 223  Q
    ||||||||| | || ||||||||| || ||| ||||||| |||||||||| |||||||||| |||||   ||||| |||| ||||   |||||  |||||    
T  49387 tagaaagcgttgaacctagattgagaa-gaacaagtttgcaagcgacaaacttatgaaaatagggttccaaaatccaccataaataaggaaaactctcta 49289  T
Q  224 aaatattattgaatgaataaaagtt 248  Q
    |||||| ||| ||||||||||||||    
T  49288 aaatataattaaatgaataaaagtt 49264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 46; Significance: 3e-17; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 1320143 - 1320204
Alignment:
Q  195 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||| ||||||||| |||||||| |||||||||||||||||||||||||||||| |||||||    
T  1320143 aatccaccagaaatagagaaaattctctaaaatattattgaatgaataaaagttatctctta 1320204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 128 - 248
Target Start/End: Original strand, 2472716 - 2472836
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatc-ctctaaaa 226  Q
    |||||||||| ||| ||||||| |||  ||||||| || ||||||| || ||||||| |||||  | |||| ||||||||||||||||| | | ||||||    
T  2472716 aagcgctaaacctaaattgaaagagac-aagtttgcaaccgacaaacttgtgaaaatagggttccggaatccaccagaaattgagaaaaactcactaaaa 2472814  T
Q  227 tattattgaatgaataaaagtt 248  Q
    ||||||||| ||||||||||||    
T  2472815 tattattgattgaataaaagtt 2472836  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 219 - 264
Target Start/End: Original strand, 20400733 - 20400778
Alignment:
Q  219 ctctaaaatattattgaatgaataaaagttgtctcttaaacaacaa 264  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||    
T  20400733 ctctaaaatattattgaatgaataaaagttgtctcttaaactacaa 20400778  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 195 - 256
Target Start/End: Original strand, 8536467 - 8536528
Alignment:
Q  195 aatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||| ||||||||||||| |||  ||||||||||||||  ||||||||||||||| ||||||    
T  8536467 aatccaccagaaattgaggaaactctctaaaatattatctaatgaataaaagttgcctctta 8536528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 164 - 256
Target Start/End: Original strand, 365655 - 365748
Alignment:
Q  164 aagcgacaaaattatgaaaatcgggttatgaaatctaccagaaatt-gagaaaatcctctaaaatattattgaatgaataaaagttgtctctta 256  Q
    |||||||||| || ||||||| ||||| |  |||| |||||||| | |||||||  |||  |||||||||||| |||||||||||| |||||||    
T  365655 aagcgacaaacttgtgaaaatagggttcttgaatccaccagaaaatagagaaaagtctcagaaatattattgattgaataaaagttatctctta 365748  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0251 (Bit Score: 44; Significance: 4e-16; HSPs: 1)
Name: scaffold0251
Description:

Target: scaffold0251; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 9765 - 9644
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaa--ttatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaa 225  Q
    ||||| |||| |||||||||||| ||| ||||||  ||||||| ||   || ||||||| |||||  |||||| |||||||||||||||||  |||| ||    
T  9765 aagcggtaaacctagattgaaaa-gaacaagtttccaagcgactaacacttgtgaaaatagggttccgaaatccaccagaaattgagaaaactctctgaa 9667  T
Q  226 atattattgaatgaataaaagtt 248  Q
    |||||||||||||||||||||||    
T  9666 atattattgaatgaataaaagtt 9644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 131 - 246
Target Start/End: Complemental strand, 145793 - 145677
Alignment:
Q  131 cgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaa-tcctctaaaatat 229  Q
    ||||||| ||||||||||||| |  ||||||| |||||||||  || | ||||| ||||| |  |||| |||| |||||||||||| |  ||||||||||    
T  145793 cgctaaacctagattgaaaaaaatcaagtttgcaagcgacaagcttgtaaaaatagggttctagaatccaccaaaaattgagaaaaattatctaaaatat 145694  T
Q  230 tattgaatgaataaaag 246  Q
    |||||||||||||||||    
T  145693 tattgaatgaataaaag 145677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 206 - 253
Target Start/End: Original strand, 144022 - 144069
Alignment:
Q  206 aattgagaaaatcctctaaaatattattgaatgaataaaagttgtctc 253  Q
    |||||||||||  ||||||||||||||||||| |||||||||| ||||    
T  144022 aattgagaaaactctctaaaatattattgaataaataaaagttatctc 144069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240 (Bit Score: 37; Significance: 0.000000000006; HSPs: 2)
Name: scaffold0240
Description:

Target: scaffold0240; HSP #1
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 148 - 248
Target Start/End: Complemental strand, 16089 - 15989
Alignment:
Q  148 aaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcctctaaaatattattgaatgaataaaagt 247  Q
    ||||||| ||||||| ||| ||||||  | ||||||| |  ||||  |||| |||||||||| ||||||  || ||||||||||||||||||||||||||    
T  16089 aaaagaacaagtttgcaagtgacaaacatctgaaaatagtattatagaatccaccagaaatttagaaaactctataaaatattattgaatgaataaaagt 15990  T
Q  248 t 248  Q
    |    
T  15989 t 15989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0240; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 128 - 248
Target Start/End: Complemental strand, 1719 - 1599
Alignment:
Q  128 aagcgctaaatctagattgaaaaagaataagtttgtaagcgacaaaattatgaaaatcgggttatgaaatctaccagaaattgagaaaatcc-tctaaaa 226  Q
    ||||| |||| ||||||||||| | || ||||||| || ||||||| || | |||||  |||| || |||| ||||||| ||||||||| |  |||||||    
T  1719 aagcgttaaacctagattgaaaga-aacaagtttgcaaacgacaaacttgtcaaaatatggttctggaatccaccagaatttgagaaaaactatctaaaa 1621  T
Q  227 tattattgaatgaataaaagtt 248  Q
    ||||||| ||||||||||||||    
T  1620 tattattcaatgaataaaagtt 1599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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