View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5860A-LTR4-TNT-insertion-3 (Length: 394)
Name: SO5860A-LTR4-TNT-insertion-3
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5860A-LTR4-TNT-insertion-3 |
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Alignment Details
Target: chr3 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 53146990 - 53147366
Alignment:
| Q |
10 |
ccaagtccacaaatctaacataaagatcataagaaaattattaaactatttgcagcagtatgcaccaattctgtgccatattacaaaagtacaagatcat |
109 |
Q |
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| T |
53146990 |
ccaagtccacaaatctaacataaagatcataagaaaattattaaactatttgcagcagtatgcaccaattctgtgccatattacaaaagtacaagatcat |
53147089 |
T |
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| Q |
110 |
caaagcataacagccccattatattgtttgcccagtaagggaaccttgatcatagcactgtgtaacaatacttttcagaagcccttcagtctaccttctt |
209 |
Q |
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| T |
53147090 |
caaagcataacagccccattatattgtttgcccagtaagggaaccttgatcatagcactgtgtaacaatacttttcagaagcccttcagtctaccttctt |
53147189 |
T |
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| Q |
210 |
aaaaatatacagtttcatgtagcttatagatcactactatgatttgagttactactactaagtactgtaatagcttaatgttttaaaaattaaacaacaa |
309 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
53147190 |
aaaaatatacagtttcatgtagcttatagatcactactatgatttgagttactactactaactactgtaatagcttaatgttttaaaaattaaacaacaa |
53147289 |
T |
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| Q |
310 |
tttatttcgtggatctacattggttattctgcacatggtaattcaattcaatctcatggttatttttgtcttaatta |
386 |
Q |
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| T |
53147290 |
tttatttcgtggatctacattggttattctgcacatggtaattcaattcaatctcatggttatttttgtcttaatta |
53147366 |
T |
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