View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5860A-LTR4-TNT-insertion-4 (Length: 381)
Name: SO5860A-LTR4-TNT-insertion-4
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5860A-LTR4-TNT-insertion-4 |
 | |
|
| [»] scaffold1749 (1 HSPs) |
| | |
|
| [»] scaffold0428 (1 HSPs) |
| | |
|
Alignment Details
Target: chr2 (Bit Score: 358; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 358; E-Value: 0
Query Start/End: Original strand, 10 - 367
Target Start/End: Original strand, 17437906 - 17438263
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17437906 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
17438005 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17438006 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
17438105 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17438106 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
17438205 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
17438206 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
17438263 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 16)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 14 - 365
Target Start/End: Complemental strand, 33361357 - 33361006
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||| |||||| ||| ||||| |||| ||| |||| |||||||||||||||| ||||||||||||||| | |
|
|
| T |
33361357 |
actcgcaacaatttcactgattttctttttgatgcccttcaaacaaaaggcattattgtatttttggatgacactaatcttccaaaaggtgaatccatcg |
33361258 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
|| | ||||| |||||||||| ||||||||||||||||||||||| | || |||||| |||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
33361257 |
gacccgagctcattcgagcaatcgaaggatctcaggtttttgttgcattcttttcaagaaactatgcttcctcaacatggtgtttgcaagaattagaaaa |
33361158 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||||||||||||| || ||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||| |||| |
|
|
| T |
33361157 |
gatatgtgaatgcattaagggatcaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcggaagcaaagtgagatttatagtgaa |
33361058 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaa |
365 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
33361057 |
gcttttgtcaaacatgaacaaagattccaacaagactctaagaaggtgtcaa |
33361006 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 33265745 - 33265390
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||||| ||| ||||| |||| ||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
33265745 |
agatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtattttcggatgacactaatcttccaaaaggtgaatcc |
33265646 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|| ||| | ||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33265645 |
attggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttttcaataaactatgcttcctcaacatggtgtttacaagaattag |
33265546 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
33265545 |
aaaagatatgtgaatgcgttaagggatcaggaaaacatgttcttccagttttctatgatgttgatccctctgatgtgagaaagcaaagtgggatttatgg |
33265446 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaa |
365 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
33265445 |
tgaagcctttatcaaacatgaacaaagattccaacaagaacatcagaaggtgtcaa |
33265390 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 10 - 365
Target Start/End: Complemental strand, 33274889 - 33274534
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
||||||||| ||||||||||| |||||||||||||| |||||| ||| ||||| |||| ||| |||| |||||||||||||||| ||||||||||||| |
|
|
| T |
33274889 |
agatactcggaacaatttcacagattttctttttgatgcccttcaaacaaaaggcattattgtattttcggatgacactaatcttccaaaaggtgaatcc |
33274790 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|| ||| | ||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | ||||||||||||||||||||||||| ||||||||| |
|
|
| T |
33274789 |
attggacccgagctccttcgagcaatcgaaggatctcaagtttttgttgcggtcttttcaataaactatgcttcctcaacatggtgtttacaagaattag |
33274690 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
|||||||||||||||||||| ||| ||||||||||||||||||| |||||||||||||||||||| ||||| ||| |||||||||||||||||||| |
|
|
| T |
33274689 |
aaaagatatgtgaatgcgttaagggatcaggaaaacatgttcttccagttttctatgatgttgatccctctgatgtgagaaagcaaagtgggatttatgg |
33274590 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaa |
365 |
Q |
| |
|
|||||| ||| |||||||||||||||||||||||||||| | |||||||||||||| |
|
|
| T |
33274589 |
tgaagcctttatcaaacatgaacaaagattccaacaagaacatcagaaggtgtcaa |
33274534 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33307345 - 33306992
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
||||||||||| || ||||||||||||||||| |||||||||| ||||| ||||||||||||||| |||||||||||||||||||| |||||||| |||| |
|
|
| T |
33307345 |
actcgcaacaactttactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttcgggatgacactaatcttcaaaagggtgaatctatag |
33307246 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
| ||||||| ||||||||||| |||||||||| |||||||||||| || |||||||| |||||||||||||||||||||| || |||||||||| || |
|
|
| T |
33307245 |
aacctgagctccttcgagcaatcgaaggatctcgggtttttgttgcagtcttctcaaggaactatgcttcctcaacatggtgcctgcaagaattagagaa |
33307146 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcag-gtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatga |
312 |
Q |
| |
|
||||||| ||||||||||| | ||| |||||||| ||||||||||||| ||||||||||||||||||| ||| ||||||||||||||||||||| ||| |
|
|
| T |
33307145 |
gatatgtaaatgcgttcagagatcca-gaaaacatattcttcctgttttttatgatgttgatccttctgtggttcgaaagcaaagtgggatttattgtga |
33307047 |
T |
|
| Q |
313 |
agcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
||| ||||||||||||||||||||||||||||||||| || ||| |||||||||| |
|
|
| T |
33307046 |
agcctttgtcaaacatgaacaaagattccaacaagactttgagatggtgtcaaga |
33306992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 33060418 - 33060061
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||| ||||| |||| | | |||||| |||| || |||||||||||||||||||| | |
|
|
| T |
33060418 |
agatactcgcaacaatttcactgattttctttttgatgcccttgaaacaaaaggcattatggtatttcgggatgtcattaatcttcaaaaaggtgaatgc |
33060319 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|||||| |||||||| |||| ||||| ||| ||||||||||| |||||| | ||||||| |||||||||||||||| ||||| ||| ||||||||| |
|
|
| T |
33060318 |
ataggacctgagctttttcgtgcaatcgaaatatctcaggtttacgttgcgatcttctcaaagaactatgcttcctcaacgtggtgcttgcaagaattag |
33060219 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
||||||||||||||||| || ||| | | |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||| |
|
|
| T |
33060218 |
aaaagatatgtgaatgcattaaggggtcgggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcggaagcaaagtggaatttatag |
33060119 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| | ||||||||||||| |
|
|
| T |
33060118 |
tgaagcttttgtcaaacatgaacaaagattccaacaagactctatgaaggtgtcaaga |
33060061 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 31566345 - 31566698
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||| |||||| ||||| ||||||| |||||| ||||| || ||||||||||||||||||||||||| |
|
|
| T |
31566345 |
actcgcaacaatttcattgattttctttttgatgcctttgaaacaaaaggtatttttgtatttcgggatgatacaaatcttcaaaaaggtgaatccatag |
31566444 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
| ||||||||||||||||||| |||||||||| ||||||||||| || ||||||||| | ||||||||||| |||||||| ||| |||||||||| || |
|
|
| T |
31566445 |
ggcctgagcttcttcgagcaatccaaggatctcatgtttttgttgccgtcttctcaagaaattatgcttcctcgacatggtgcttgcaagaattagagaa |
31566544 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||| ||||||||| || ||| | | |||||||||||||| |||||||||||||||||||||||||||||| ||||||||||||||||||||| |||| |
|
|
| T |
31566545 |
gatttgtgaatgcattgaggaatctgaaaaacatgttcttcttgttttctatgatgttgatccttctgaggttcgaaagcaaagtgggatttattctgaa |
31566644 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||||| ||||| |||||||||| |
|
|
| T |
31566645 |
gcttttgccaaacatgaacaaagattccgacaagactctcagatggtgtcaaga |
31566698 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 186; E-Value: 1e-100
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33390932 - 33390579
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
|||||||||||||||| ||||||||||||||| ||||| |||| ||||| |||| ||| |||||| ||| ||| ||||||||||||||||||||||||| |
|
|
| T |
33390932 |
actcgcaacaatttcattgattttctttttgatgccctggaaacaaaaggcattcttgtatttcgggataacagaaatcttcaaaaaggtgaatccatag |
33390833 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
|| |||| ||||||| | |||| |||||||||||||||| ||||||||||||||||||| ||||||||| |||||||||||||||| ||||| |||| || |
|
|
| T |
33390832 |
gacctgaacttcttcaatcaatcgaaggatctcaggtttatgttgcggttttctcaagaaactatgctttctcaacatggtgtttgcaagaaatagagaa |
33390733 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||| || ||||| || || | | | ||||| ||||||||||||||| ||||||||||||||||||||||| |||||||||||||| |||||| || || |
|
|
| T |
33390732 |
gatttgggaatgtgtccaaggatccgaaaaacttgttcttcctgttttttatgatgttgatccttctgaggttcgaaagcaaagtggaatttatgataaa |
33390633 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || ||||| |||||||||| |
|
|
| T |
33390632 |
gcttttgtcaaacatgaacaaagattccaacaaaactctcagatggtgtcaaga |
33390579 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33403470 - 33403117
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
||||| |||||||||||||||||||||||||| |||||||||| ||||| |||||||||||||||||||||||||||||||||| | ||||||||| ||| |
|
|
| T |
33403470 |
actcggaacaatttcactgattttctttttgatgcccttgaaacaaaaggcatttttgcatttcgagatgacactaatcttcaacagggtgaatccttag |
33403371 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
| | ||||||||||||||||| |||||| ||||||||| |||| || || ||||| |||||||||||||||||||||| || |||||||||| || |
|
|
| T |
33403370 |
aacccgagcttcttcgagcaatcaaaggatttcaggttttcgttgtcgtcttttcaaggaactatgcttcctcaacatggtgcttaaaagaattagagaa |
33403271 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
|||||||||||||||| ||| | |||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||| |||||| |||| |
|
|
| T |
33403270 |
gatatgtgaatgcgttaagggatccaaaaaacatgttattcctgttttctatgatgttgatccttctgaggttcgaaagcaaagtggtatttattgtgaa |
33403171 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|| |||||||| |||||| ||||||||||||||| | || ||| |||||||||| |
|
|
| T |
33403170 |
gcctttgtcaagcatgaaaaaagattccaacaaggctttgagatggtgtcaaga |
33403117 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 182; E-Value: 3e-98
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33412777 - 33412424
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
|||||||||||||||||||||| ||||||||| || ||||||| |||| |||| ||||||| | |||||||| |||||| ||||||||||| ||||| |
|
|
| T |
33412777 |
actcgcaacaatttcactgattatctttttgatgcacttgaaaccaaaggtatttatgcatttagggatgacacaaatcttaaaaaaggtgaagtcatag |
33412678 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
|| ||||||| ||||| ||||| ||||||||||||||||| || || || || ||||| |||||||||||||||||||||| || ||||||||||||| |
|
|
| T |
33412677 |
gacctgagctccttcgtgcaatcgaaggatctcaggttttcgtcgcagtcttttcaaggaactatgcttcctcaacatggtgcctgcaagaattagaaaa |
33412578 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||| |||||||| ||||||| || | |||||| |||||||||||||| |||||| ||||||||||||||||||| |||||||||||||||||| |||| |
|
|
| T |
33412577 |
gatctgtgaatgtgttcagggacctgaaaaacacgttcttcctgttttttatgatattgatccttctgaggtgcggaagcaaagtgggatttattgtgaa |
33412478 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||| |||||||||||| |
|
|
| T |
33412477 |
tcttttgtcaaacatgaacaaagattccaacaagaccctcataaggtgtcaaga |
33412424 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 14 - 367
Target Start/End: Complemental strand, 33288434 - 33288081
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
||||||||||||||||||| || ||| || || || ||| ||| ||| | |||| ||||||| | |||||||| ||||||||||||||||||||||||| |
|
|
| T |
33288434 |
actcgcaacaatttcactggttatctattagatgctcttaaaacaaacggtatttatgcatttagggatgacaccaatcttcaaaaaggtgaatccatag |
33288335 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
|| ||||||| ||||||||||| |||||||| |||||||| ||||| || ||||||||| |||||||||||||||||||||| ||| | ||||||||||| |
|
|
| T |
33288334 |
gacctgagctccttcgagcaatcgaaggatcccaggttttcgttgcagtattctcaagaaactatgcttcctcaacatggtgcttgcaggaattagaaaa |
33288235 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
|||||||||||| ||||| || || ||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
33288234 |
gatatgtgaatgtgttcatgtatcaagaaaacacattcttccagttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatggtgaa |
33288135 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|| ||| || ||||||||||| ||||||||||||| ||||| |||||||||| |
|
|
| T |
33288134 |
gcctttaccatacatgaacaaacattccaacaagactctcagatggtgtcaaga |
33288081 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 178; E-Value: 6e-96
Query Start/End: Original strand, 14 - 367
Target Start/End: Original strand, 33641838 - 33642191
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
|||||||||||||| ||||||||||||||||| ||||||||| ||||| |||| | | |||||| ||||||| |||||||||||||||||||| |||| |
|
|
| T |
33641838 |
actcgcaacaatttgactgattttctttttgatgcccttgaatcaaaaggcattatggtatttcgggatgacattaatcttcaaaaaggtgaatatatag |
33641937 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
|||||||||||||||||||||| ||| ||||||| |||| || || || ||||||||| |||||||||||||||||||||| | |||||||||| || |
|
|
| T |
33641938 |
gatctgagcttcttcgagcaatcgaaagatctcatgtttacgtagcagtcttctcaagaaactatgcttcctcaacatggtgccttcaagaattagagaa |
33642037 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||| ||||||||| || ||| || |||||||||||||||| |||| ||||||||||||||||||||||| |||||||||||||| |||||| ||| |
|
|
| T |
33642038 |
gatttgtgaatgcattgagggattagaaaaacatgttcttcctattttttatgatgttgatccttctgaggtacgaaagcaaagtggaatttattgggaa |
33642137 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||| | |||||||||| |
|
|
| T |
33642138 |
gcttttgtcaaacatgaacaaagattccaacaagactttcaaatggtgtcaaga |
33642191 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 201 - 340
Target Start/End: Complemental strand, 9169530 - 9169391
Alignment:
| Q |
201 |
aagaattagaaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg |
300 |
Q |
| |
|
||||||||||||||||||||||||| |||| || |||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
9169530 |
aagaattagaaaagatatgtgaatgtgttcgtgtatcaggaaaacatgttcttcttgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg |
9169431 |
T |
|
| Q |
301 |
gatttatcatgaagcttttgtcaaacatgaacaaagattc |
340 |
Q |
| |
|
||||||| |||||| |||| ||||||||||||||||||| |
|
|
| T |
9169430 |
gatttattgtgaagcatttgccaaacatgaacaaagattc |
9169391 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 22 - 300
Target Start/End: Complemental strand, 12782351 - 12782073
Alignment:
| Q |
22 |
caatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccataggatctgag |
121 |
Q |
| |
|
||||||||||||| |||||||| |||||| |||||||| |||||| |||| |||||||||||||||||||||||||| | ||||||| ||| || |
|
|
| T |
12782351 |
caatttcactgatcatctttttggtgcccttcaaagaaaaagaatttttacattcagagatgacactaatcttcaaaaaggtaattccatagcatccgac |
12782252 |
T |
|
| Q |
122 |
cttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaagatatgtg |
221 |
Q |
| |
|
|| ||| |||||| ||||| ||||||||||| ||| || ||||| | | |||||||||| ||||| ||||||||| |||||||| | | || | |
|
|
| T |
12782251 |
ctcattcaagcaattgaaggctctcaggttttcattgttgtattctctaaaaactatgcttcttcaacttggtgtttgcgagaattagcatacatcctta |
12782152 |
T |
|
| Q |
222 |
aatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg |
300 |
Q |
| |
|
| ||| | || ||||||| ||||| |||||||| ||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
12782151 |
actgcagtgtattgtatggaaaacgcgttctgcctgttttttatgatgttgatctttctgaggtgcgaaagcaaagtgg |
12782073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 12781383 - 12781322
Alignment:
| Q |
239 |
ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg |
300 |
Q |
| |
|
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
12781383 |
ggaaaacacgttcttcctgttttctatgatgttgatccttctgaggtacaaaagcaaagtgg |
12781322 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 249 - 300
Target Start/End: Complemental strand, 12786303 - 12786252
Alignment:
| Q |
249 |
ttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg |
300 |
Q |
| |
|
|||| ||| |||| |||||||||||||||||||||||||||||||||||||| |
|
|
| T |
12786303 |
ttctgcctattttttatgatgttgatccttctgaggtgcgaaagcaaagtgg |
12786252 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 300
Target Start/End: Complemental strand, 12785573 - 12785512
Alignment:
| Q |
239 |
ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgg |
300 |
Q |
| |
|
|||||||| |||||||| |||| ||||||||||||||||||||||| | |||||||||||| |
|
|
| T |
12785573 |
ggaaaacacattcttcctattttttatgatgttgatccttctgaggtacaaaagcaaagtgg |
12785512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1749 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold1749
Description:
Target: scaffold1749; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 1009 - 652
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| || | |||||||| ||||||| ||| ||||||||| |
|
|
| T |
1009 |
agatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatcc |
910 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|||||| ||||||| |||||| |||| ||||||||||||||||| ||||| || || |||||| |||||||||| ||||||||||| || ||||||||| |
|
|
| T |
909 |
ataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaattag |
810 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
| ||||| ||||||||| | ||| | |||||| ||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
809 |
agaagatttgtgaatgcatcaagggatctggaaaatatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgggatttattg |
710 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
709 |
ggacgattttgccaaacatgaacaaagattcaaacaagaccctcataaggtgtcaaga |
652 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0428 (Bit Score: 154; Significance: 1e-81; HSPs: 1)
Name: scaffold0428
Description:
Target: scaffold0428; HSP #1
Raw Score: 154; E-Value: 1e-81
Query Start/End: Original strand, 10 - 367
Target Start/End: Complemental strand, 9770 - 9413
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||| |||||||||||||||| |||| ||| || | |||||||| ||||||| ||| ||||||||| |
|
|
| T |
9770 |
agatactcgcaacaatttcactaattttctttttgctgcccttgaaagaaaaggtatttatgctttcagggatgacacaaatcttccaaagggtgaatcc |
9671 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|||||| ||||||| |||||| |||| ||||||||||||||||| ||||| || || |||||| |||||||||| ||||||||||| || ||||||||| |
|
|
| T |
9670 |
ataggacctgagctccttcgaacaatcgaaggatctcaggttttcgttgctgtcttatcaagaaactatgcttcttcaacatggtgcctgcaagaattag |
9571 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
| ||||| ||||||||| | ||| | |||||| ||||||||||| ||||||||| ||| |||||||||||||| ||||||||||||||||||| |
|
|
| T |
9570 |
agaagatttgtgaatgcatcaagggatctggaaaatatgttcttcctattttctatggtgtcgatccttctgaggtaaaaaagcaaagtgggatttattg |
9471 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaacaagaccttcagaaggtgtcaaga |
367 |
Q |
| |
|
|| | ||||| ||||||||||||||||||| ||||||||| ||| |||||||||||| |
|
|
| T |
9470 |
ggacgattttgccaaacatgaacaaagattcaaacaagaccctcataaggtgtcaaga |
9413 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 140; Significance: 3e-73; HSPs: 13)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 31501347 - 31501682
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
|||||||||||||||||| || ||||||||| ||| | | ||| ||| |||| |||||||| | |||||||||||||||| ||||||||||||||||| |
|
|
| T |
31501347 |
actcgcaacaatttcacttatcatctttttgatgccttcaacagagaaggcattcttgcatttagggatgacactaatcttccaaaaggtgaatccatag |
31501446 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
||| ||||||||||| ||||| |||| ||| | ||||||||||||| ||||||| ||||||||||||||| ||||| ||| ||||||||||||| |
|
|
| T |
31501447 |
catccgagcttcttcgtgcaattgaagattcttatatttttgttgcggtcctctcaaggaactatgcttcctcaatttggtgcttgcaagaattagaaaa |
31501546 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||| ||||||||| || || | |||||||||||| |||||||||||||||||||||||| | | ||||||||||||||||||||||||| |||| |
|
|
| T |
31501547 |
gatccttgaatgcgtccacgtatctaaaaaacatgttctgcctgttttctatgatgttgatcctcccgtggtgcgaaagcaaagtgggatttattgtgaa |
31501646 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagac |
349 |
Q |
| |
|
|| ||||||||||||||||||| ||||||||||||| |
|
|
| T |
31501647 |
gcatttgtcaaacatgaacaaatattccaacaagac |
31501682 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 132; E-Value: 2e-68
Query Start/End: Original strand, 14 - 349
Target Start/End: Original strand, 31496177 - 31496512
Alignment:
| Q |
14 |
actcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatccatag |
113 |
Q |
| |
|
||||||||||||||||||||| ||||||||| || | | ||| ||| ||||| ||||||| |||||||||||||||||| ||||||||||||||||| |
|
|
| T |
31496177 |
actcgcaacaatttcactgatcatctttttgataccttccacagagaaggcatttctgcatttagagatgacactaatcttccaaaaggtgaatccatag |
31496276 |
T |
|
| Q |
114 |
gatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattagaaaa |
213 |
Q |
| |
|
|| || |||| ||| | ||||| ||| |||||||||||||||| ||| || ||||| ||||||||| |||||| | ||| ||| ||||||||||||| |
|
|
| T |
31496277 |
gacctaagctcctttgtgcaattgaaaactctcaggtttttgttgtggtcttatcaaggaactatgctttctcaacttcgtgcttgcaagaattagaaaa |
31496376 |
T |
|
| Q |
214 |
gatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaa |
313 |
Q |
| |
|
||| |||||| || |||| | |||||||||||| |||||||||||||||||||| |||||| |||||||||||||||||| |||||| |||| |
|
|
| T |
31496377 |
gatccttgaatgggtcaaggtatctaaaaaacatgttctgcctgttttctatgatgttgacccttctatggtgcgaaagcaaagtggaatttatggtgaa |
31496476 |
T |
|
| Q |
314 |
gcttttgtcaaacatgaacaaagattccaacaagac |
349 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||| |
|
|
| T |
31496477 |
gcatttgtcaaacatgaacaaagattccaacaagac |
31496512 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 10 - 349
Target Start/End: Original strand, 31476233 - 31476572
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
||||||||||||||||||||||||||| |||||||| ||||| ||| ||||| ||||||||||| | |||||||||||||||||||||||||||||| |
|
|
| T |
31476233 |
agatactcgcaacaatttcactgatttcctttttgatgccctcgaagaaaaaggtgtttttgcatttagggatgacactaatcttcaaaaaggtgaatcc |
31476332 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|||| | |||| || ||| ||||| ||||| ||||||||||| |||| ||| || |||| |||| |||| |||||| ||||| ||| ||||||| | |
|
|
| T |
31476333 |
atagcacctgaactctttcatgcaattgaagggtctcaggttttcgttgtggtcttgtcaaagaactacgctttctcaacttggtgcttgaaagaattgg |
31476432 |
T |
|
| Q |
210 |
aaaagat-atgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatc |
308 |
Q |
| |
|
|| | || |||| || ||||| | | ||| ||||||| ||||| ||||||||||||||||||||| |||||||||||||| |||||||||| |
|
|
| T |
31476433 |
aatacatcctgtg-ttgtgttcaagcatctaaaaagtatgttctacctgtgttctatgatgttgatccttctttggtgcgaaagcaaactgggatttata |
31476531 |
T |
|
| Q |
309 |
atgaagcttttgtcaaacatgaacaaagattccaacaagac |
349 |
Q |
| |
|
|||||| |||||| |||||| ||| |||||| |||||||| |
|
|
| T |
31476532 |
gtgaagcatttgtccaacatggacacagattcaaacaagac |
31476572 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 31030615 - 31030280
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||| ||| |||| |||| |||||||| |||||| ||||||||| ||||||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
31030615 |
agatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacactaatcttcaaaaaggtgaatcc |
31030516 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
||| | | ||||| |||| ||||| ||||| ||||||||||| ||||||| |||| | | |||||||||||||||| ||||| ||| |||||| | |
|
|
| T |
31030515 |
ataccacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattgg |
31030416 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
| | || ||| ||| ||| || | |||| || ||||||||||||||| |||||||||||||||||||||||| || | |||| || ||||| |
|
|
| T |
31030415 |
tacacatccttgactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacgg |
31030316 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaaca |
345 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
31030315 |
tgaagccttttccaaacatgaacaaacattccaaca |
31030280 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 345
Target Start/End: Complemental strand, 31020734 - 31020399
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||| ||| |||| |||| |||||||| |||||| ||||||||| ||||||||||||| |||| ||| ||||||||||||||||||||||| |
|
|
| T |
31020734 |
agatactcgcttcaacttcattgatcatctttttgctgcccttcaaagaaaaggcatttttgcatttagagacgacgctaatcttcaaaaaggtgaatcc |
31020635 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
||| | | ||||| |||| ||||| ||||| ||||||||||| ||||||| |||| | | ||||| |||||||||| ||||| ||| |||||| | |
|
|
| T |
31020634 |
ataccacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactattcttcctcaacttggtgcttgcgagaattgg |
31020535 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
| | || ||| ||| ||| || | |||| || ||||||||||||||| |||||||||||||||||||||||| || | |||| || ||||| |
|
|
| T |
31020534 |
tacacatccttgactgcagtcaagtttctggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacgg |
31020435 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaaca |
345 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
31020434 |
tgaagccttttccaaacatgaacaaacattccaaca |
31020399 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 31488818 - 31489153
Alignment:
| Q |
10 |
agatactcgcaacaatttcactgattttctttttgacgcccttgaaagaaaagacatttttgcatttcgagatgacactaatcttcaaaaaggtgaatcc |
109 |
Q |
| |
|
|||||||||| ||| || |||||| |||||||| |||||| ||||||||| ||||||||| ||| ||||||||||||| ||||||||||||||||| |
|
|
| T |
31488818 |
agatactcgcttcaactttactgatcatctttttgctgcccttcaaagaaaaggcatttttgcgtttagagatgacactaagcttcaaaaaggtgaatcg |
31488917 |
T |
|
| Q |
110 |
ataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctcaagatactatgcttcctcaacatggtgtttggaagaattag |
209 |
Q |
| |
|
|||| | | ||||| |||| ||||| ||||| ||||||||||| ||||||| |||| | | |||||||||||||||| ||||| ||| |||||| | |
|
|
| T |
31488918 |
atagcacccgagctcattcgtgcaattgaagggtctcaggttttcattgcggtcctctccaaaaactatgcttcctcaacttggtgcttgcgagaattgg |
31489017 |
T |
|
| Q |
210 |
aaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatca |
309 |
Q |
| |
|
|| | || | | | | ||| || |||| || ||||||||||||||| |||||||||||||||||||||||| || | |||| || ||||| |
|
|
| T |
31489018 |
aatacatccttcactacagtcaagtttttggaagacgtgttcttcctgttttttatgatgttgatccttctgaggtgagacatcaaaaaggaatttacgg |
31489117 |
T |
|
| Q |
310 |
tgaagcttttgtcaaacatgaacaaagattccaaca |
345 |
Q |
| |
|
|||||| ||| |||||||||||||| ||||||||| |
|
|
| T |
31489118 |
tgaagccttttccaaacatgaacaaacattccaaca |
31489153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 59; E-Value: 7e-25
Query Start/End: Original strand, 239 - 349
Target Start/End: Complemental strand, 31529166 - 31529056
Alignment:
| Q |
239 |
ggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagat |
338 |
Q |
| |
|
||||||| |||||| |||||||||||||||||||||||||| |||||||||||||||||||||| |||| | |||| |||| | ||||||| |||||| |
|
|
| T |
31529166 |
ggaaaacgtgttctccctgttttctatgatgttgatccttccgaggtgcgaaagcaaagtgggagttataaaaaagcatttgcccaacatgaggaaagat |
31529067 |
T |
|
| Q |
339 |
tccaacaagac |
349 |
Q |
| |
|
|| |||||||| |
|
|
| T |
31529066 |
tcaaacaagac |
31529056 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 245 - 349
Target Start/End: Complemental strand, 31162278 - 31162174
Alignment:
| Q |
245 |
catgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaac |
344 |
Q |
| |
|
|||||||| ||||||||||||||||||||||||| |||| || || | |||| || | |||| |||||| ||| |||||||||||||||||||||||| |
|
|
| T |
31162278 |
catgttctgcctgttttctatgatgttgatccttatgagatgagatatcaaaaaggaaattatgttgaagcctttttcaaacatgaacaaagattccaac |
31162179 |
T |
|
| Q |
345 |
aagac |
349 |
Q |
| |
|
||||| |
|
|
| T |
31162178 |
aagac |
31162174 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 98 - 346
Target Start/End: Complemental strand, 31151150 - 31150902
Alignment:
| Q |
98 |
aaaggtgaatccataggatctgagcttcttcgagcaatagaaggatctcaggtttttgttgcggttttctc-aagatactatgcttcctcaacatggtgt |
196 |
Q |
| |
|
|||||||||||||||| | |||| || ||||||||||| |||| |||||| ||||||||| ||||||||| |||| |||||||||||||| |||||| |
|
|
| T |
31151150 |
aaaggtgaatccatagcacctgaactccttcgagcaattgaagactctcagatttttgttgtggttttctctaaga-actatgcttcctcagtttggtgt |
31151052 |
T |
|
| Q |
197 |
ttggaagaattagaaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaa |
296 |
Q |
| |
|
||| |||||| || ||| | || || |||| | | ||||||| |||||| ||||| ||||||||||||||||| || ||||||||| | |||| |
|
|
| T |
31151051 |
ttgcgagaattggagtgcatacttcaaagctttcaactatctggaaaacgtgttctgcctgtgttctatgatgttgatccatcagaggtgcgatatcaaa |
31150952 |
T |
|
| Q |
297 |
gtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaacaa |
346 |
Q |
| |
|
|| |||| |||||| || | ||||||||| |||||||||||||| |
|
|
| T |
31150951 |
aaggatgttatgctgaagccttagctaaacatgaagaaagattccaacaa |
31150902 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 255 - 331
Target Start/End: Original strand, 31482317 - 31482393
Alignment:
| Q |
255 |
ctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaa |
331 |
Q |
| |
|
|||||||||||||||| |||| |||||||| |||||||||||||||| |||| | |||| |||| |||||||||| |
|
|
| T |
31482317 |
ctgttttctatgatgtcaatccatctgaggtacgaaagcaaagtgggagttatgctaaagcctttgccaaacatgaa |
31482393 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 174 - 297
Target Start/End: Original strand, 31244434 - 31244557
Alignment:
| Q |
174 |
actatgcttcctcaacatggtgtttggaagaattagaaaagatatgtgaatgcgttcaggtgccaggaaaacatgttcttcctgttttctatgatgttga |
273 |
Q |
| |
|
|||||||||| ||||| ||||| ||| | ||| ||| |||||| ||||||| || | || ||||| || |||||| ||| ||||||||||||| || |
|
|
| T |
31244434 |
actatgcttcttcaacgtggtgcttgaaggaactagtaaagattgctgaatgcattgaagtaacaggacaaattgttctacctattttctatgatgtgga |
31244533 |
T |
|
| Q |
274 |
tccttctgaggtgcgaaagcaaag |
297 |
Q |
| |
|
||| |||||||||||||||||||| |
|
|
| T |
31244534 |
tccatctgaggtgcgaaagcaaag |
31244557 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 31159899 - 31159801
Alignment:
| Q |
247 |
tgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaaca |
345 |
Q |
| |
|
|||||| ||| ||||||||||||||||||||||||||||| || | |||| ||| | |||| ||||| ||| |||||| ||| ||||||||||||| |
|
|
| T |
31159899 |
tgttctccctattttctatgatgttgatccttctgaggtgagacatcaaaatggaagttatggagaagcccttgccaaacacgaagaaagattccaaca |
31159801 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 247 - 345
Target Start/End: Complemental strand, 31163657 - 31163559
Alignment:
| Q |
247 |
tgttcttcctgttttctatgatgttgatccttctgaggtgcgaaagcaaagtgggatttatcatgaagcttttgtcaaacatgaacaaagattccaaca |
345 |
Q |
| |
|
|||||| ||| |||||||||| ||||||| |||||||||||||||| ||||| || |||| |||||| ||||| |||||| || ||| |||| |||| |
|
|
| T |
31163657 |
tgttctgcctattttctatgaagttgatctttctgaggtgcgaaagtaaagtcagaattatggtgaagcctttgttaaacataaagaaacattcaaaca |
31163559 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 161 - 201
Target Start/End: Complemental strand, 25436381 - 25436341
Alignment:
| Q |
161 |
gttttctcaagatactatgcttcctcaacatggtgtttgga |
201 |
Q |
| |
|
|||||||||||| | |||||||| ||||||||||||||||| |
|
|
| T |
25436381 |
gttttctcaagagattatgcttcatcaacatggtgtttgga |
25436341 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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