View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5860A-LTR4-TNT-insertion-5 (Length: 142)
Name: SO5860A-LTR4-TNT-insertion-5
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5860A-LTR4-TNT-insertion-5 |
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Alignment Details
Target: chr7 (Bit Score: 125; Significance: 9e-65; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 125; E-Value: 9e-65
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 23869679 - 23869803
Alignment:
| Q |
9 |
tattgtcgtggctacacaataaccagtgactttatgtcagaatatcttagataattggcattggagaagagtagccaaactttccatcgttgctttgcac |
108 |
Q |
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| T |
23869679 |
tattgtcgtggctacacaataaccagtgactttatgtcagaatatcttagataattggcattggagaagagtagccaaactttccatcgttgctttgcac |
23869778 |
T |
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| Q |
109 |
gacaatgtatacttacatgcaattg |
133 |
Q |
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| T |
23869779 |
gacaatgtatacttacatgcaattg |
23869803 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 53; Significance: 9e-22; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 53; E-Value: 9e-22
Query Start/End: Original strand, 9 - 133
Target Start/End: Original strand, 45240588 - 45240712
Alignment:
| Q |
9 |
tattgtcgtggctacacaataaccagtgactttatgtcagaatatcttagataattggcattggagaagagtagccaaactttccatcgttgctttgcac |
108 |
Q |
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| T |
45240588 |
tattgtcgtggctccacaatattcaatgtctttatgttagaatgtcttagataattggcattgaagaatggtagccaaactcttcatcgttgctctacac |
45240687 |
T |
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| Q |
109 |
gacaatgtatacttacatgcaattg |
133 |
Q |
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| T |
45240688 |
ggcaacgtatccttacctgcaattg |
45240712 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 51; Significance: 1e-20; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 51; E-Value: 1e-20
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 18565558 - 18565644
Alignment:
| Q |
16 |
gtggctacacaataaccagtgactttatgtcagaatatcttagataattggcattggagaagagtagccaaactttccatcgttgct |
102 |
Q |
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| T |
18565558 |
gtggcaacacaataaccaatgtctttgtgtcacaatatcttggataattggcattgaagaagagtagccaaactctccatagttgct |
18565644 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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