View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: SO5860A-LTR4-TNT-insertion-6 (Length: 321)
Name: SO5860A-LTR4-TNT-insertion-6
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5860A-LTR4-TNT-insertion-6 |
 | |
|
| [»] scaffold0294 (1 HSPs) |
| | |
|
| [»] scaffold0373 (1 HSPs) |
| | |
|
Alignment Details
Target: chr6 (Bit Score: 303; Significance: 1e-170; HSPs: 22)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 303; E-Value: 1e-170
Query Start/End: Original strand, 10 - 312
Target Start/End: Complemental strand, 5104901 - 5104599
Alignment:
| Q |
10 |
atgttggccgggtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaa |
109 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5104901 |
atgttggccgggtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaa |
5104802 |
T |
|
| Q |
110 |
ggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcg |
209 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5104801 |
ggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcg |
5104702 |
T |
|
| Q |
210 |
gggagtagaataatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaa |
309 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
5104701 |
gggagtagaataatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaa |
5104602 |
T |
|
| Q |
310 |
ttg |
312 |
Q |
| |
|
||| |
|
|
| T |
5104601 |
ttg |
5104599 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 5094025 - 5094316
Alignment:
| Q |
21 |
gtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactct |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||| ||||| ||||| |||||||| ||||||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
5094025 |
gtgaatttacaagaacaacttctctttgacatctgtaaagatatgacaatcaaaatacaaagcattgaaagtggaaaaatcatattaaaggatagactct |
5094124 |
T |
|
| Q |
121 |
gccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
||| |||||||||| | ||| |||||||||||||||||||| | |||||||| |||||||||| |||||| ||||||||||||| ||||||||||||| |
|
|
| T |
5094125 |
gccgtaaaagagtactaattttacttgatgatgttaatacattggaccaactaaatgctttgtgcggaagtcataaatggtttggtccggggagtagaat |
5094224 |
T |
|
| Q |
221 |
aatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
||||||||| |||||||||| ||||||||| ||||| |||||| ||| | |||| | ||||||||||||||| ||||||||||||||||| |
|
|
| T |
5094225 |
aatcattaccacaagggataaacatatacttagtgggaatagggttaataaagtatttaaaatgaaacacatggttgaaagtgaatcaattg |
5094316 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 156; E-Value: 7e-83
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 5159519 - 5159228
Alignment:
| Q |
21 |
gtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactct |
120 |
Q |
| |
|
||||||||||| ||| ||||||||||||| |||| |||||| ||||| || ||||||||||| |||||| ||||||| |||||||||||||||||||| |
|
|
| T |
5159519 |
gtgaatttacaggaacaacttctctttgacatctacaaagatatgacgatcaaaatacaaagcattgaaagtggaaaaatcatattaaaggatagactct |
5159420 |
T |
|
| Q |
121 |
gccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
|||||||||||||| | ||| |||| ||||| ||||||||| | |||||||| |||||||||| |||||| ||||||||||||||| ||||||||||| |
|
|
| T |
5159419 |
gccataaaagagtactaattttactcgatgacgttaatacattggaccaactaaatgctttgtgcggaagtcataaatggtttggttctgggagtagaat |
5159320 |
T |
|
| Q |
221 |
aatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
||||||||| ||||||||||| ||||||||| ||||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5159319 |
aatcattaccacaagggatagacatatacttagtgggaatagggttaataaagtatttgaaatgaaacacatggatgaaagtgaatcaattg |
5159228 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 5348395 - 5348686
Alignment:
| Q |
21 |
gtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactct |
120 |
Q |
| |
|
|||||||||||| || ||||||| ||||| ||||||||||| ||||||| || |||||||| |||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5348395 |
gtgaatttacaaaaacaacttctgtttgacatctgcaaagatatgacaaccaatatacaaagcattgaaagcggaaaaatcatattaaaggatagactct |
5348494 |
T |
|
| Q |
121 |
gccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
|||||||||||||| | ||||| |||||||||||||||||| | |||||| | |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5348495 |
gccataaaagagtactaattgttcttgatgatgttaatacattggaccaattaaatgctttgtgcggaagttgtaaatggtttggttcggggagtagaat |
5348594 |
T |
|
| Q |
221 |
aatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
||||| | ||||| ||||| ||||||||||||||| |||||| ||||| |||| |||||||| || || ||||||| ||||||||||| |
|
|
| T |
5348595 |
tatcatcaacacaagagatagacatatactttgtgggaatagggtgaaccaaatatacgaaatgaagcatatcgatgaaaatgaatcaattg |
5348686 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #5
Raw Score: 144; E-Value: 1e-75
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 5423737 - 5424028
Alignment:
| Q |
21 |
gtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactct |
120 |
Q |
| |
|
||||||||||||||| |||||||||||||||| |||||||| ||||||| ||||||||||| ||||| ||||||| |||| ||||||||||||| |
|
|
| T |
5423737 |
gtgaatttacaagaacaacttctctttgatatatgcaaagatatgacaaccaaaatacaaagcattgaattcggaaaacttgtattgaaggatagactct |
5423836 |
T |
|
| Q |
121 |
gccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
|||| ||||||||| | ||| |||||||||| ||||||||| | ||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
5423837 |
gccacaaaagagtactaattttacttgatgacgttaatacattggaccaactgaatgctttgtgtggaagtcataaatggtttggttcggggagtagaat |
5423936 |
T |
|
| Q |
221 |
aatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
||| || |||||||| ||||| ||||||||||||||| |||||| | | | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5423937 |
aattatcacaacaagagatagacatatactttgtgggaatagggttcataaagtattcaaaatgaaacacatggatgaaagtgaatcaattg |
5424028 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #6
Raw Score: 140; E-Value: 3e-73
Query Start/End: Original strand, 21 - 312
Target Start/End: Original strand, 5368444 - 5368735
Alignment:
| Q |
21 |
gtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactct |
120 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||| ||| ||| ||||| ||||| ||||| |||||||| |||||||||||||||||||| |
|
|
| T |
5368444 |
gtgaatttacaagaacaacttctctttgatatctgcaaagatatggcaaccaaaattcaaagcattgaatgcggaaaaatcatattaaaggatagactct |
5368543 |
T |
|
| Q |
121 |
gccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
|||||||||||||||| || |||| ||||| ||||||||| | |||||||| ||||||||||||||||| |||| |||||||||||||| || ||||| |
|
|
| T |
5368544 |
gccataaaagagtattaatattactcgatgacgttaatacattggaccaactaaatgctttgtgtggaagtcgtaagtggtttggttcgggaagcagaat |
5368643 |
T |
|
| Q |
221 |
aatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
|||||| || ||||| || || ||||||||| ||||| |||||| ||| | |||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
5368644 |
aatcatcaccacaagagacagacatatacttagtgggaatagggttaataaagtattcaaaatgaaacacatggatgaaagtgaatcaattg |
5368735 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #7
Raw Score: 128; E-Value: 4e-66
Query Start/End: Original strand, 21 - 312
Target Start/End: Complemental strand, 5356634 - 5356343
Alignment:
| Q |
21 |
gtgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactct |
120 |
Q |
| |
|
||||||||||||||| ||||||||| ||||||||||||||| | ||||| ||||||||||| ||||||| ||||||| |||||||||||||||||| | |
|
|
| T |
5356634 |
gtgaatttacaagaacaacttctctctgatatctgcaaagacacgacaaccaaaatacaaagcattgaaaatggaaaaatcatattaaaggatagacttt |
5356535 |
T |
|
| Q |
121 |
gccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
| |||||||||||| | ||||||||||||||||||||||| | ||||||||| ||| ||||||||| ||| | | |||||||||| |||||||||||| |
|
|
| T |
5356534 |
gtcataaaagagtactaattgtacttgatgatgttaatactttggaccaactgaatgttttgtgtggcagtcatcattggtttggtttggggagtagaat |
5356435 |
T |
|
| Q |
221 |
aatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
||| || |||||||| ||||| |||||||| ||||| ||| | ||||| ||||||||||||| || |||||||| ||||||||||||| |
|
|
| T |
5356434 |
aattatcacaacaagagatagatatatacttcgtgggagtagagttaacctaatatatgaaatgaagcatatggatgacagtgaatcaattg |
5356343 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #8
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 22 - 311
Target Start/End: Complemental strand, 5069088 - 5068802
Alignment:
| Q |
22 |
tgaatttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctg |
121 |
Q |
| |
|
|||||||||||||| ||||||| ||||| |||||||||| | ||| ||| ||| ||| |||||| ||||||| ||||||||||||||||||| | |
|
|
| T |
5069088 |
tgaatttacaagaacaacttctgtttgacatctgcaaag---ttacagcgaaagtaccaagcattgaaagtggaaaaaccatattaaaggatagactcag |
5068992 |
T |
|
| Q |
122 |
ccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaata |
221 |
Q |
| |
|
||| ||||||||| | ||| |||| ||||| |||| |||| | |||||||| ||||||||||||||||| |||| |||||||||||||| ||||||||| |
|
|
| T |
5068991 |
ccagaaaagagtactaattttactcgatgacgttactacattggaccaactaaatgctttgtgtggaagtcgtaagtggtttggttcgggaagtagaata |
5068892 |
T |
|
| Q |
222 |
atcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaatt |
311 |
Q |
| |
|
||||| || ||||||||||| ||||||||| ||||| |||| | ||| | |||| |||||||||||||||||||||||||||||||| |
|
|
| T |
5068891 |
atcatcaccacaagggatagacatatacttcgtgggaatagagttaataaagtattcaaaatgaaacacatggatgaaagtgaatcaatt |
5068802 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #9
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 27 - 312
Target Start/End: Complemental strand, 5133917 - 5133632
Alignment:
| Q |
27 |
ttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgccata |
126 |
Q |
| |
|
||||||||| ||||||| ||||||||| |||||||||||||| || ||||||| |||| |||||||| || ||||||||||||||||| |||| |
|
|
| T |
5133917 |
ttacaagaacaacttctgtttgatatcaacaaagaaatgacaactaagatacaaaacattgagtcaggaaaaaatattttaaaggatagactctggcata |
5133818 |
T |
|
| Q |
127 |
aaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcat |
226 |
Q |
| |
|
|||||||||| ||||||||||||||||| ||||| || || ||| || ||||||||||||||||| |||||||||||||||| |||||| |||||||||| |
|
|
| T |
5133817 |
aaagagtattaattgtacttgatgatgtaaatactctggaacaaatgaatgctttgtgtggaagtagtaaatggtttggttcagggagtcgaataatcat |
5133718 |
T |
|
| Q |
227 |
tacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
||| || || || | |||||||||| || || |||| | || ||| |||| ||||||||||| ||||||||| ||| ||||||| |
|
|
| T |
5133717 |
tactaccagagacaagcatatacttagtaggaatagagttagccaggtattcaaaatgaaacacttggatgaaaatgagtcaattg |
5133632 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #10
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 28 - 232
Target Start/End: Complemental strand, 5286134 - 5285930
Alignment:
| Q |
28 |
tacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgccataa |
127 |
Q |
| |
|
|||||||| ||||| | ||||||||||| ||||||| ||||| ||||||| || ||| |||||||||| ||||||||| | ||| |||||||| |
|
|
| T |
5286134 |
tacaagaacaacttttatttgatatctgtaaagaaagaacaatcaaaataccaaacactgagttaggaaaaaacacattaaaggacaaactttgccataa |
5286035 |
T |
|
| Q |
128 |
aagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcatt |
227 |
Q |
| |
|
||||||| | ||||||||||||||||| |||||||| ||||||||| || |||| ||||||||| || |||||||||| || ||||| ||||||||| |
|
|
| T |
5286034 |
aagagtacttattgtacttgatgatgtgaatacactagaccaactgaatactttctgtggaagtcgtgaatggtttggctcagggagcgtaataatcatc |
5285935 |
T |
|
| Q |
228 |
acaac |
232 |
Q |
| |
|
||||| |
|
|
| T |
5285934 |
acaac |
5285930 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #11
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 104 - 311
Target Start/End: Complemental strand, 5148894 - 5148687
Alignment:
| Q |
104 |
attaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggttt |
203 |
Q |
| |
|
|||||||||||||||||| |||||||||| | |||||||||||||||| | ||| | || ||| || |||||||||||||||| || |||||||| |
|
|
| T |
5148894 |
attaaaggatagactctgtggtaaaagagtacttcttgtacttgatgatgtgagtacgttggatcaattgactgctttgtgtggaagtcgtcaatggttt |
5148795 |
T |
|
| Q |
204 |
ggttcggggagtagaataatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtg |
303 |
Q |
| |
|
|| ||||| ||||||||||| || ||||| || |||| ||||||||| | ||| |||| | | |||||||||| |||||||| | ||||||||| ||| |
|
|
| T |
5148794 |
ggctcgggaagtagaataattatcacaactagagatatgcatatactgagagggaatagagttgaccatgtatacaaaatgaaagaaatggatgaaggtg |
5148695 |
T |
|
| Q |
304 |
aatcaatt |
311 |
Q |
| |
|
|||||||| |
|
|
| T |
5148694 |
aatcaatt |
5148687 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #12
Raw Score: 64; E-Value: 6e-28
Query Start/End: Original strand, 93 - 232
Target Start/End: Complemental strand, 5262089 - 5261950
Alignment:
| Q |
93 |
ggaaaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagtt |
192 |
Q |
| |
|
|||||||||||||||||||| | ||| ||||||||||||||| | ||||||||||||||||| |||||||| ||| ||| | || |||||||||||||| |
|
|
| T |
5262089 |
ggaaaaaacatattaaaggacaaactttgccataaaagagtacttattgtacttgatgatgtgaatacactagacaaaccgaatactttgtgtggaagtc |
5261990 |
T |
|
| Q |
193 |
gtaaatggtttggttcggggagtagaataatcattacaac |
232 |
Q |
| |
|
|| |||||||||| || ||||| ||||||||| ||||| |
|
|
| T |
5261989 |
gtgaatggtttggctcagggagcgtaataatcatcacaac |
5261950 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #13
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 5075744 - 5075458
Alignment:
| Q |
26 |
tttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgccat |
125 |
Q |
| |
|
|||||||||| ||||||| |||||||| |||||||| | || || || |||| |||| |||| ||||||| ||||||| ||||||||| || ||| |
|
|
| T |
5075744 |
tttacaagaacaacttctttttgatatttgcaaagatacgaaaactaagatacgaagtattgagtcgggaaaaactatattaatggatagactatgtcat |
5075645 |
T |
|
| Q |
126 |
aaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatca |
225 |
Q |
| |
|
|||||| | | ||||||||||||||||| | | | | || ||| || |||||||||| |||| | |||||||| || |||| |||||||||||||| | |
|
|
| T |
5075644 |
aaaagaattcttattgtacttgatgatgtgagtgaattggagcaattgaatgctttgtgcggaaatcgtaaatggcttagttcagggagtagaataatta |
5075545 |
T |
|
| Q |
226 |
ttacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
| ||||| ||||||| |||||||||| | ||| |||| | | |||| || | |||||||| | |||||||||||||||||||||| |
|
|
| T |
5075544 |
tcacaaccagggatatgcatatacttagagggaatagagttgaccaagtgtgcaaaatgaaagaaatggatgaaagtgaatcaattg |
5075458 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #14
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 5183885 - 5183759
Alignment:
| Q |
106 |
taaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttgg |
205 |
Q |
| |
|
||||||||||||||| ||||||||||||| | | |||||||||||||| |||||| ||||||||||| |||||||||||||||| ||| ||| |||| |
|
|
| T |
5183885 |
taaaggatagactcttccataaaagagtacttctggtacttgatgatgtgaatacatttgaccaactgaatgctttgtgtggaaggagtatttggcttgg |
5183786 |
T |
|
| Q |
206 |
ttcggggagtagaataatcattacaac |
232 |
Q |
| |
|
| | ||||| ||||||||||| ||||| |
|
|
| T |
5183785 |
tccagggagcagaataatcatcacaac |
5183759 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #15
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 93 - 251
Target Start/End: Complemental strand, 5692057 - 5691899
Alignment:
| Q |
93 |
ggaaaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagtt |
192 |
Q |
| |
|
|||||||| | ||||| |||||||||||||||||||| ||| | |||||||| |||||||| | |||| ||| ||| || |||||||||||||| || |
|
|
| T |
5692057 |
ggaaaaaatacattaatggatagactctgccataaaaaggtacttattgtactggatgatgtgagtacatctgatcaattgaatgctttgtgtggatctt |
5691958 |
T |
|
| Q |
193 |
gtaaatggtttggttcggggagtagaataatcattacaacaagggataggcatatactt |
251 |
Q |
| |
|
|| ||||||||||| | || ||||||||||| || ||||| || |||| |||||||||| |
|
|
| T |
5691957 |
gtgaatggtttggtcccggcagtagaataattataacaactagagataagcatatactt |
5691899 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #16
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 26 - 251
Target Start/End: Original strand, 5445072 - 5445297
Alignment:
| Q |
26 |
tttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgccat |
125 |
Q |
| |
|
|||||||||| ||||| | ||||||||||||||||||| ||||| || |||| || |||| ||||||| ||| ||||| |||| |||| ||||| |
|
|
| T |
5445072 |
tttacaagaacaacttttatttgatatctgcaaagaaagaacaatcaagataccaaacattgagttaggaaaaagcatgttaaaagataaactcagccat |
5445171 |
T |
|
| Q |
126 |
aaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatca |
225 |
Q |
| |
|
| ||||||| | |||||||||||||||| |||||| | |||||||| || |||| |||| |||| || |||||||||| || ||||||| |||||| | |
|
|
| T |
5445172 |
acaagagtacttgttgtacttgatgatgtgaatacattagaccaacttaatactttctgtgcaagtcgtgaatggtttggctcagggagtataataataa |
5445271 |
T |
|
| Q |
226 |
ttacaacaagggataggcatatactt |
251 |
Q |
| |
|
| ||||| || |||| |||| ||||| |
|
|
| T |
5445272 |
tcacaaccagagatatgcatttactt |
5445297 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #17
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 5395112 - 5395237
Alignment:
| Q |
106 |
taaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttgg |
205 |
Q |
| |
|
|||||| |||| ||| ||||||||||||| | | ||||||||||||| |||||| |||| ||||| |||| |||||||||||| |||| ||| |||| |
|
|
| T |
5395112 |
taaagggtagattcttccataaaagagtacttctaatacttgatgatgtgaatacatttgaacaactaaatgcattgtgtggaagtcgtaattggcttgg |
5395211 |
T |
|
| Q |
206 |
ttcggggagtagaataatcattacaa |
231 |
Q |
| |
|
||| ||||| ||||||||||| |||| |
|
|
| T |
5395212 |
ttcagggagcagaataatcatcacaa |
5395237 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #18
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 25 - 308
Target Start/End: Original strand, 5341682 - 5341965
Alignment:
| Q |
25 |
atttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgcca |
124 |
Q |
| |
|
||||||||||| |||||| || |||||||||||||||| |||| ||| ||||||| |||| |||||| |||||||||||||||||||| || |
|
|
| T |
5341682 |
atttacaagaacgacttcttttcgatatctgcaaagaaacaacaacaaagatacaaaacattgagtcgggaaaagttatattaaaggatagactctgtca |
5341781 |
T |
|
| Q |
125 |
taaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatc |
224 |
Q |
| |
|
||| | | || | ||||||| |||||||| ||| || | ||||||||| | ||||| ||||| |||| ||||||||||| ||||||| |||| || |
|
|
| T |
5341782 |
taagaaaatacttcttgtactagatgatgtgaattcattggaccaactgaaagctttatgtggtgagcgtaattggtttggttcagggagtaaaatagtc |
5341881 |
T |
|
| Q |
225 |
attacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatca |
308 |
Q |
| |
|
|| ||||| || |||| | |||||||| | ||| |||| | | |||| ||||||| |||||| | ||||||| || ||||||| |
|
|
| T |
5341882 |
atcacaactagagatatgaatatacttagagggaatagagttgaccaggtatatgtgatgaaagaaatggatgcaaatgaatca |
5341965 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #19
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 25 - 250
Target Start/End: Original strand, 5431395 - 5431620
Alignment:
| Q |
25 |
atttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgcca |
124 |
Q |
| |
|
||||||||||| ||||||| | |||||||| || || || ||| | || ||||||||| |||| || |||| ||||||||||| || || || || |
|
|
| T |
5431395 |
atttacaagaacaacttctatctgatatcttcagaggaacgacgaccaagatacaaagtattgattctgggaaaattatattaaaggacaggctttgtca |
5431494 |
T |
|
| Q |
125 |
taaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatc |
224 |
Q |
| |
|
||||||| || | ||||||||||| ||||| ||| | || || |||||||||||||||||||| |||| |||||||||| |||||||||||||| |
|
|
| T |
5431495 |
taaaagaatacttattgtacttgacgatgtgaatgagttggaacagttggatgctttgtgtggaagtcgtaattggtttggtttagggagtagaataatt |
5431594 |
T |
|
| Q |
225 |
attacaacaagggataggcatatact |
250 |
Q |
| |
|
|| ||||| || ||| ||||||||| |
|
|
| T |
5431595 |
atcacaaccagaaatatgcatatact |
5431620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #20
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 165 - 232
Target Start/End: Original strand, 5381777 - 5381844
Alignment:
| Q |
165 |
gaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaac |
232 |
Q |
| |
|
|||||||| ||||| ||||||||||| |||||||||||||||| |||| |||||||||||| ||||| |
|
|
| T |
5381777 |
gaccaactaaatgctctgtgtggaagtcgtaaatggtttggttcagggactagaataatcatgacaac |
5381844 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #21
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 103 - 220
Target Start/End: Original strand, 5174932 - 5175049
Alignment:
| Q |
103 |
tattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtt |
202 |
Q |
| |
|
|||||||||||||||| || ||||| |||||||| || ||||||| ||||| || | || || |||||||||||||||||||| |||| ||||| |
|
|
| T |
5174932 |
tattaaaggatagactttgtcataagagagtatttatcatacttgacgatgtcgatgagttggagcagttggatgctttgtgtggaagtcgtaattggtt |
5175031 |
T |
|
| Q |
203 |
tggttcggggagtagaat |
220 |
Q |
| |
|
|||||| || |||||||| |
|
|
| T |
5175032 |
tggttcaggaagtagaat |
5175049 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #22
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 172 - 220
Target Start/End: Original strand, 5276828 - 5276876
Alignment:
| Q |
172 |
tggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaat |
220 |
Q |
| |
|
|||||||||||||||||||| |||| ||||||||||| || |||||||| |
|
|
| T |
5276828 |
tggatgctttgtgtggaagtcgtaattggtttggttcaggaagtagaat |
5276876 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 95; Significance: 2e-46; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 95; E-Value: 2e-46
Query Start/End: Original strand, 26 - 312
Target Start/End: Complemental strand, 36215905 - 36215619
Alignment:
| Q |
26 |
tttacaagaaaaacttctctttgatatctgcaaagaaatgacaataaaaatacaaagtgttgaaaacggaaaaaacatattaaaggatagactctgccat |
125 |
Q |
| |
|
||||||| || |||||||||||||||| |||||||||| ||||| |||||||||||| |||| ||||||| |||||||| |||||||| || | |
|
|
| T |
36215905 |
tttacaacaacaacttctctttgatatttgcaaagaaacgacaaccaaaatacaaagtattgaggcaggaaaaattatattaaaagatagactatgtggt |
36215806 |
T |
|
| Q |
126 |
aaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatca |
225 |
Q |
| |
|
||||||||| | ||||||||||||| || | |||| | || ||| | ||||||||||||||||| || ||||||||||| ||||||||||||||||| |
|
|
| T |
36215805 |
aaaagagtacttcttgtacttgatgacgtgagtacattggatcaatttaatgctttgtgtggaagtcgtcaatggtttggtgtggggagtagaataatca |
36215706 |
T |
|
| Q |
226 |
ttacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaagtgaatcaattg |
312 |
Q |
| |
|
| ||||| || ||||||||||||||| | ||| |||| | | |||| ||||| | ||||||| | |||||||||||||||||||||| |
|
|
| T |
36215705 |
tcacaactagagataggcatatacttagagggaatagagttgaccaagtatacgcaatgaaagaaatggatgaaagtgaatcaattg |
36215619 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 70; Significance: 1e-31; HSPs: 19)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 4358475 - 4358624
Alignment:
| Q |
102 |
atattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggt |
201 |
Q |
| |
|
||||||||||| ||||| || |||||||||||| | ||||||||||| ||||| |||| | | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4358475 |
atattaaaggaaagactgtgtcataaaagagtacttattgtacttgacgatgtcaataaattggaccaactaaatgctttgtgtggaagttgtaaatggt |
4358574 |
T |
|
| Q |
202 |
ttggttcggggagtagaataatcattacaacaagggataggcatatactt |
251 |
Q |
| |
|
||| | | || |||||||| ||||| ||||| ||||||| |||||||||| |
|
|
| T |
4358575 |
ttgctccaggaagtagaattatcatcacaactagggataagcatatactt |
4358624 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 102 - 307
Target Start/End: Complemental strand, 4126374 - 4126169
Alignment:
| Q |
102 |
atattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggt |
201 |
Q |
| |
|
||||||||||| |||| || ||||||||||| | |||||||||| ||||| |||| | | |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
4126374 |
atattaaaggaacgactttgtcataaaagagttcttcttgtacttgacgatgtgaataaattggaccaactcaatgctttgtgtggaagttgtaaatggt |
4126275 |
T |
|
| Q |
202 |
ttggttcggggagtagaataatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtatatgaaatgaaacacatggatgaaag |
301 |
Q |
| |
|
||| | | ||||||||||||||||| || || ||||||| |||||||||| | |||||||| | | || | |||| ||||||| | ||||||||||| |
|
|
| T |
4126274 |
ttgctccagggagtagaataatcatcacgaccagggataagcatatacttcgaggggatagagttgacaaaatatacataatgaaagaaatggatgaaag |
4126175 |
T |
|
| Q |
302 |
tgaatc |
307 |
Q |
| |
|
|||||| |
|
|
| T |
4126174 |
tgaatc |
4126169 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 93 - 250
Target Start/End: Original strand, 4333608 - 4333765
Alignment:
| Q |
93 |
ggaaaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagtt |
192 |
Q |
| |
|
|||||| | ||||||||||| ||||| || ||||||||||| | ||||||||||| |||||||||| | | |||||||| || | ||||||||||| |
|
|
| T |
4333608 |
ggaaaatatatattaaaggacagactatgtcataaaagagttcttattgtacttgacgatgttaataaattggaccaactaaatattctgtgtggaagtc |
4333707 |
T |
|
| Q |
193 |
gtaaatggtttggttcggggagtagaataatcattacaacaagggataggcatatact |
250 |
Q |
| |
|
|||||||||||| | | ||||||||||||||||||||||| ||||||| ||||||||| |
|
|
| T |
4333708 |
gtaaatggtttgctcctgggagtagaataatcattacaactagggataagcatatact |
4333765 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 62; E-Value: 9e-27
Query Start/End: Original strand, 114 - 251
Target Start/End: Complemental strand, 4323027 - 4322890
Alignment:
| Q |
114 |
agactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcgggga |
213 |
Q |
| |
|
|||||||| |||||||||||| | |||||||||| ||||| |||| ||| ||||| || |||||||||||||||||||||||||||||| | | || | |
|
|
| T |
4323027 |
agactctgtcataaaagagtacttcttgtacttgacgatgtgaataaactggaccagctaaatgctttgtgtggaagttgtaaatggtttgctccaggta |
4322928 |
T |
|
| Q |
214 |
gtagaataatcattacaacaagggataggcatatactt |
251 |
Q |
| |
|
||||||||||||| ||||| || |||| |||||||||| |
|
|
| T |
4322927 |
gtagaataatcatcacaactagagataagcatatactt |
4322890 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 4343007 - 4343156
Alignment:
| Q |
102 |
atattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggt |
201 |
Q |
| |
|
||||||||||| || ||||| ||||||||||| | |||||||||| ||||| |||| | | || ||||| ||||||||||||||||| ||| ||||| |
|
|
| T |
4343007 |
atattaaaggaaaggctctgtcataaaagagttcttcttgtacttgacgatgtgaataaattggatcaactaaatgctttgtgtggaagtcgtagatggt |
4343106 |
T |
|
| Q |
202 |
ttggttcggggagtagaataatcattacaacaagggataggcatatactt |
251 |
Q |
| |
|
||| | | ||||||||||||||||| ||||| ||||||| |||||||||| |
|
|
| T |
4343107 |
ttgctccagggagtagaataatcatcacaaccagggataagcatatactt |
4343156 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 96 - 245
Target Start/End: Complemental strand, 6535582 - 6535433
Alignment:
| Q |
96 |
aaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgta |
195 |
Q |
| |
|
||||| ||||| ||| | ||||| | ||| ||||| ||||| |||||||||||||||||||| | | |||||||| | |||||||||||||| | |
|
|
| T |
6535582 |
aaaaatatattgaagcaaagactttcccagaaaagggtattttttgtacttgatgatgttaatgaattggaccaactaaaggctttgtgtggaagccgag |
6535483 |
T |
|
| Q |
196 |
aatggtttggttcggggagtagaataatcattacaacaagggataggcat |
245 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||| |||| |
|
|
| T |
6535482 |
aatggtttggttcggggagtagaataatcatcacaacaagggatatgcat |
6535433 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 251
Target Start/End: Original strand, 4351296 - 4351443
Alignment:
| Q |
102 |
atattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggt |
201 |
Q |
| |
|
||||||||||| |||||||| ||||| |||| | |||||||||| ||||| |||| | | |||||||| || |||||||||||||||||||||||| |
|
|
| T |
4351296 |
atattaaaggaaagactctgtcataa--gagttctccttgtacttgacgatgtgaataaattggaccaacttaatactttgtgtggaagttgtaaatggt |
4351393 |
T |
|
| Q |
202 |
ttggttcggggagtagaataatcattacaacaagggataggcatatactt |
251 |
Q |
| |
|
||| | | ||||||||||||||||| ||||| ||||||| | |||||||| |
|
|
| T |
4351394 |
ttgctcctgggagtagaataatcatcacaaccagggatatggatatactt |
4351443 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 139 - 240
Target Start/End: Original strand, 6713891 - 6713992
Alignment:
| Q |
139 |
ttgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaaggga |
238 |
Q |
| |
|
|||| ||||||||||| |||| ||| |||||||| | |||||||||||||| | |||||||||||| ||||||||||| ||||||| |||||||| || |
|
|
| T |
6713891 |
ttgtgcttgatgatgtgaataaactggaccaactaaaggctttgtgtggaagccgcaaatggtttggtccggggagtagagtaatcatcacaacaagaga |
6713990 |
T |
|
| Q |
239 |
ta |
240 |
Q |
| |
|
|| |
|
|
| T |
6713991 |
ta |
6713992 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 139 - 245
Target Start/End: Complemental strand, 6624316 - 6624210
Alignment:
| Q |
139 |
ttgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaaggga |
238 |
Q |
| |
|
|||| ||||||||||| ||| | | |||||||| | |||||||||||||| || ||||||||||| ||||||||||||| ||||| ||||||||||| |
|
|
| T |
6624316 |
ttgtgcttgatgatgtgaatgaattggaccaactaaaggctttgtgtggaagccgtgaatggtttggtccggggagtagaattatcatcacaacaaggga |
6624217 |
T |
|
| Q |
239 |
taggcat |
245 |
Q |
| |
|
|| |||| |
|
|
| T |
6624216 |
tatgcat |
6624210 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #10
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 141 - 226
Target Start/End: Original strand, 25568096 - 25568181
Alignment:
| Q |
141 |
gtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcat |
226 |
Q |
| |
|
|||||||||||||| |||||| | || ||| || |||||||||||||| || || |||||||||||||||| ||||||||| |||| |
|
|
| T |
25568096 |
gtacttgatgatgtgaatacattggatcaattgaatgctttgtgtggacgtcgtcaatggtttggttcgggtagtagaatagtcat |
25568181 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #11
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 139 - 235
Target Start/End: Original strand, 6750927 - 6751023
Alignment:
| Q |
139 |
ttgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaag |
235 |
Q |
| |
|
|||| ||||||||||| ||| | | |||||||| | |||||||||||||| || ||||||||||| | ||||||||||||||||| |||||||| |
|
|
| T |
6750927 |
ttgtgcttgatgatgtgaatgaattggaccaactaaaagctttgtgtggaagccgtgaatggtttggtccagggagtagaataatcatcacaacaag |
6751023 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 190 - 277
Target Start/End: Complemental strand, 4135630 - 4135543
Alignment:
| Q |
190 |
gttgtaaatggtttggttcggggagtagaataatcattacaacaagggataggcatatactttgtggggatagggctaaccatgtata |
277 |
Q |
| |
|
|||| |||||||||||||| ||||||||||||||||| ||||| || |||| ||| ||| || | |||||||| | |||||| ||||| |
|
|
| T |
4135630 |
gttgcaaatggtttggttcagggagtagaataatcatcacaaccagagataagcaaataattagaggggatagagttaaccaagtata |
4135543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #13
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 179 - 242
Target Start/End: Original strand, 6756585 - 6756648
Alignment:
| Q |
179 |
tttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaagggatagg |
242 |
Q |
| |
|
|||||||||||| || ||||||||||| |||| |||||||||||||| |||||||| |||||| |
|
|
| T |
6756585 |
tttgtgtggaagccgtgaatggtttggtccgggtagtagaataatcatcacaacaagagatagg |
6756648 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #14
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 166 - 240
Target Start/End: Original strand, 6834281 - 6834355
Alignment:
| Q |
166 |
accaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaagggata |
240 |
Q |
| |
|
||||||| ||||||||||||||||| | ||||||||||||| || |||||||||||||| || ||||| |||| |
|
|
| T |
6834281 |
accaactaaatgctttgtgtggaagtcgcgaatggtttggttccggaagtagaataatcatcacgacaagagata |
6834355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #15
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 177 - 245
Target Start/End: Original strand, 6649173 - 6649241
Alignment:
| Q |
177 |
gctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaagggataggcat |
245 |
Q |
| |
|
|||||||||||||| || ||||||||||| ||||||||||||| ||||| ||||| || |||| |||| |
|
|
| T |
6649173 |
gctttgtgtggaagccgtgaatggtttggtccggggagtagaattatcatcacaacgagagatatgcat |
6649241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 144 - 240
Target Start/End: Complemental strand, 6547785 - 6547689
Alignment:
| Q |
144 |
cttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaagggata |
240 |
Q |
| |
|
||||||||||| ||| ||| |||||| | | || ||||||||||| | |||||||||||| | ||||| ||||||||||| |||||||| |||| |
|
|
| T |
6547785 |
cttgatgatgtaaatgaactggaccaaataaaggcattgtgtggaagccgcaaatggtttggtcccgggagcagaataatcatcacaacaagagata |
6547689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #17
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 177 - 245
Target Start/End: Complemental strand, 6589886 - 6589818
Alignment:
| Q |
177 |
gctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaagggataggcat |
245 |
Q |
| |
|
||||||||||| || || | ||||||||| |||||||||||||||| || |||||||| |||| |||| |
|
|
| T |
6589886 |
gctttgtgtggtagccgtgattggtttggtccggggagtagaataataatcacaacaagagatatgcat |
6589818 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Original strand, 6794580 - 6794620
Alignment:
| Q |
195 |
aaatggtttggttcggggagtagaataatcattacaacaag |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
6794580 |
aaatggtttggtccggggagtagaataataatcacaacaag |
6794620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 175 - 239
Target Start/End: Complemental strand, 7888610 - 7888546
Alignment:
| Q |
175 |
atgctttgtgtggaagttgtaaatggtttggttcggggagtagaataatcattacaacaagggat |
239 |
Q |
| |
|
|||||||||||||| | | |||||||||||| ||| ||||||||| |||| |||||||||||| |
|
|
| T |
7888610 |
atgctttgtgtggagatcgaaaatggtttggtaagggaagtagaatactcatcacaacaagggat |
7888546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0294 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: scaffold0294
Description:
Target: scaffold0294; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 106 - 232
Target Start/End: Complemental strand, 10601 - 10475
Alignment:
| Q |
106 |
taaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagttgtaaatggtttgg |
205 |
Q |
| |
|
||||||||| |||||| |||| |||||| | |||| ||||||||||| ||| | |||||||| ||||||||||||||||| || |||||||||| |
|
|
| T |
10601 |
taaaggatatgctctgcaataagagagtacttcttgttcttgatgatgtggatagtttggaccaactaaatgctttgtgtggaagtcgtgaatggtttgg |
10502 |
T |
|
| Q |
206 |
ttcggggagtagaataatcattacaac |
232 |
Q |
| |
|
||| |||| |||||||||||||||||| |
|
|
| T |
10501 |
ttcagggactagaataatcattacaac |
10475 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 47; Significance: 8e-18; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 93 - 235
Target Start/End: Complemental strand, 22586264 - 22586122
Alignment:
| Q |
93 |
ggaaaaaacatattaaaggatagactctgccataaaagagtattgattgtacttgatgatgttaatacacttgaccaactggatgctttgtgtggaagtt |
192 |
Q |
| |
|
|||||||||| ||||||||||| ||| ||| |||||||||| | ||||||||||||||||| | ||| || ||||||||| || |||| |||| |||| |
|
|
| T |
22586264 |
ggaaaaaacacattaaaggataaactttgcggtaaaagagtacttattgtacttgatgatgtgagtaccctagaccaactgaatactttatgtgcaagtc |
22586165 |
T |
|
| Q |
193 |
gtaaatggtttggttcggggagtagaataatcattacaacaag |
235 |
Q |
| |
|
|| |||||||||| |||||| ||||||||| |||||||| |
|
|
| T |
22586164 |
gtgaatggtttggcaaagggagtgtaataatcatcacaacaag |
22586122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0373 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: scaffold0373
Description:
Target: scaffold0373; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 195 - 235
Target Start/End: Complemental strand, 11723 - 11683
Alignment:
| Q |
195 |
aaatggtttggttcggggagtagaataatcattacaacaag |
235 |
Q |
| |
|
|||||||||||| |||||||||||||||| || |||||||| |
|
|
| T |
11723 |
aaatggtttggtccggggagtagaataataatcacaacaag |
11683 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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