View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5860A-LTR4-TNT-insertion-7 (Length: 316)
Name: SO5860A-LTR4-TNT-insertion-7
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5860A-LTR4-TNT-insertion-7 |
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Alignment Details
Target: chr4 (Bit Score: 239; Significance: 1e-132; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 239; E-Value: 1e-132
Query Start/End: Original strand, 9 - 307
Target Start/End: Complemental strand, 43062609 - 43062309
Alignment:
| Q |
9 |
tgaaaacgttactttactttactagttctaagcacaatacaatatgagccatttcagtgtagtgtagtgtagttaattgagttatgttgccccctatcgt |
108 |
Q |
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| T |
43062609 |
tgaaaacgttactttactttactagttctaagcacaatacaatatgagccatttcagtgtagtgtagtgtagttaattgagttatgttgccccctatcgt |
43062510 |
T |
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| Q |
109 |
cgttgatctcaacgacattaaacaaaaactctcccttcagtttcgtcctattcaacgttcctttcagttttgggttcgagccgttgatatttacaccgga |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062509 |
cgttgatctcaacgacattaaacaaaaactctcccttcagtttcgtcctattcaacgttcctttcagttttgggttcgagccgttgatatttacaccgga |
43062410 |
T |
|
| Q |
209 |
tacaaggttcctt--nnnnnnnnnnnnnnnnnaaccaaattgctacattaattaattaactatgcatgcttcattttctcgaattgcaggtttttcaatt |
306 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
43062409 |
tacaaggttcctttctctctctctctctctctaaccaaattgctacattaattaattaactatgcatgcttcattttctcgaattgcaggtttttcaatt |
43062310 |
T |
|
| Q |
307 |
g |
307 |
Q |
| |
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| T |
43062309 |
g |
43062309 |
T |
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