View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5860A-LTR4-TNT-insertion-8 (Length: 360)
Name: SO5860A-LTR4-TNT-insertion-8
Description: SO5860A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5860A-LTR4-TNT-insertion-8 |
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Alignment Details
Target: chr3 (Bit Score: 343; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 343; E-Value: 0
Query Start/End: Original strand, 8 - 350
Target Start/End: Original strand, 28783893 - 28784235
Alignment:
| Q |
8 |
ggaatgtcggtatccagagagggaactgaacttctacaagagggaactgaacttctgcaagagggaactgaacttctagaagagggaactgaacttctac |
107 |
Q |
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| T |
28783893 |
ggaatgtcggtatccagagagggaactgaacttctacaagagggaactgaacttctgcaagagggaactgaacttctagaagagggaactgaacttctac |
28783992 |
T |
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| Q |
108 |
aagagggaactgaacttctgcaagagggaactgaacttgaacagaaacggttggagatagttggtgtttcagtttgttggattgctccatctgtgaagtg |
207 |
Q |
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| T |
28783993 |
aagagggaactgaacttctgcaagagggaactgaacttgaacagaaacggttggagatagttggtgtttcagtttgttggattgctccatctgtgaagtg |
28784092 |
T |
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| Q |
208 |
gattaccattccatctccaacatatattcctgttatcatacaaaaatgtagttaccagagcataaatatgacactaacctcataatcatctgaataactg |
307 |
Q |
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| T |
28784093 |
gattaccattccatctccaacatatattcctgttatcatacaaaaatgtagttaccagagcataaatatgacactaacctcataatcatctgaataactg |
28784192 |
T |
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| Q |
308 |
aaagcataggataagtttggggcataagaatgtgaatacatta |
350 |
Q |
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| T |
28784193 |
aaagcataggataagtttggggcataagaatgtgaatacatta |
28784235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 260
Target Start/End: Original strand, 28791088 - 28791149
Alignment:
| Q |
199 |
tgtgaagtggattaccattccatctccaacatatattcctgttatcatacaaaaatgtagtt |
260 |
Q |
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| T |
28791088 |
tgtgaaatggatcaccatttcatctccaatatatattcctgttatattacagaaatgcagtt |
28791149 |
T |
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