View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: SO5928A-LTR4-TNT-insertion-1 (Length: 746)
Name: SO5928A-LTR4-TNT-insertion-1
Description: SO5928A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] SO5928A-LTR4-TNT-insertion-1 |
 | |
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| [»] scaffold0300 (1 HSPs) |
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Alignment Details
Target: chr4 (Bit Score: 705; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 705; E-Value: 0
Query Start/End: Original strand, 8 - 736
Target Start/End: Complemental strand, 20062363 - 20061635
Alignment:
| Q |
8 |
cctaactcctttccaaattcagactacagtacacacttcttgcacacaccctcaacatttggagatggaacttcagtgttgctggagccaaagttagacg |
107 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20062363 |
cctaactcctttccaaattcagactacagtacacacttcttgcacacaccctcaacatttggagatggaacttcagtgttgctggagccaaagttagacg |
20062264 |
T |
|
| Q |
108 |
aaattgaacccatgttttgatacttgctacagccaccttcagccttggagnnnnnnnnctacaattcttcgaagcaagctttttactctaggtgagtcaa |
207 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
20062263 |
aaattgaacccatgttttgatacttgctacagccaccttcagccttggagttttttttctacaattcttcgaagcaagctttttactctaggtgagtcaa |
20062164 |
T |
|
| Q |
208 |
gttcatcgtcccatatatacaaattacaatggtcatcattctacaaaaaaccaattcagactgtttacattaaaaggaatatttttctagcaatgaataa |
307 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20062163 |
gttcatcgtcccatatatacaaattacaatggtcatcattctacaaaaaaccaattcagactgtttacattaaaaggaatatttttctagcaatgaataa |
20062064 |
T |
|
| Q |
308 |
tagatagttatcgaagaaactgaaacatcaattgctgtaattcacaatcatcaacggcggtaaacaggaaaaatgaattgtaatgtgcctcatgaggaat |
407 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20062063 |
tagatagttatcgaagaaactgaaacatcaattgctgtaattcacaatcatcaacggcggtaaacaggaaaaatgaattgtaatgtgcctcatgaggaat |
20061964 |
T |
|
| Q |
408 |
ttgaatttcttgtaaatggtttcatggagtgatgtgaaaatagaacagtccatgtcaagcgagttcaacgtctgagtagctccaacatacttttttgtat |
507 |
Q |
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| T |
20061963 |
ttgaatttcttgtaaatggtttcatggagtgatgtgaaaatagaacagtccatgtcaagcgagttcaacgtctgagtagctccaacatacttttttgtat |
20061864 |
T |
|
| Q |
508 |
ttcaaaacatgaaactggagataatccttctgaaccttctagttgtgtctttgtcttcttcctgtgttttttagcttccattaggattgcttacttcatt |
607 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20061863 |
ttcaaaacatgaaactggagataatccttctgaaccttctagttgtgtctttgtcttcttcctgtgttttttagcttccattaggattgcttacttcatt |
20061764 |
T |
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| Q |
608 |
cacaagtctcagttattgtttctaatgaatatgttgataaggttatctttcatcctttatcatatttatatgaccataactgtttctaatcaaatgttat |
707 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20061763 |
cacaagtctcagttattgtttctaatgaatatgttgataaggttatctttcatcctttatcatatttatatgaccataactgtttctaatcaaatgttat |
20061664 |
T |
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| Q |
708 |
aggataaacgtgaaatcgaagttgaatta |
736 |
Q |
| |
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||||||||||||||||||||||||||||| |
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| T |
20061663 |
aggataaacgtgaaatcgaagttgaatta |
20061635 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0300 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: scaffold0300
Description:
Target: scaffold0300; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 252
Target Start/End: Original strand, 21031 - 21073
Alignment:
| Q |
210 |
tcatcgtcccatatatacaaattacaatggtcatcattctaca |
252 |
Q |
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|||||||||||||| |||||||||||||||| |||||||||| |
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| T |
21031 |
tcatcgtcccatatgaacaaattacaatggtcttcattctaca |
21073 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 31; Significance: 0.00000007; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000007
Query Start/End: Original strand, 210 - 252
Target Start/End: Complemental strand, 24673300 - 24673258
Alignment:
| Q |
210 |
tcatcgtcccatatatacaaattacaatggtcatcattctaca |
252 |
Q |
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| T |
24673300 |
tcatcgtcccatatgaacaaattacaatggtcttcattctaca |
24673258 |
T |
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