View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: SO5928A-LTR4-TNT-insertion-10 (Length: 756)

Name: SO5928A-LTR4-TNT-insertion-10
Description: SO5928A-LTR4
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] SO5928A-LTR4-TNT-insertion-10
SO5928A-LTR4-TNT-insertion-10
[»] chr2 (1 HSPs)
chr2 (8-746)||(20249403-20250141)


Alignment Details
Target: chr2 (Bit Score: 739; Significance: 0; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 739; E-Value: 0
Query Start/End: Original strand, 8 - 746
Target Start/End: Original strand, 20249403 - 20250141
Alignment:
Q  8 cttatatcgcattagcatatcatccagcaatctctcaaaatttctgaaaaattctaacacattaaaggtaggcttcatgtaaagccttaaacgaccatta 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249403 cttatatcgcattagcatatcatccagcaatctctcaaaatttctgaaaaattctaacacattaaaggtaggcttcatgtaaagccttaaacgaccatta 20249502  T
Q  108 aagctctcacttaattgtgttgttgtagcaccggctgaaaaagtgtgtcgcccatataccgaagcccatttttccttttagttaaagaaatcttgcatcc 207  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249503 aagctctcacttaattgtgttgttgtagcaccggctgaaaaagtgtgtcgcccatataccgaagcccatttttccttttagttaaagaaatcttgcatcc 20249602  T
Q  208 atttattttggcgaagattatgcttgtcaagtaatgactcccaagcattcagaaaatcatcctcatactcaaaaccataaatgcaactttgcaactcgct 307  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249603 atttattttggcgaagattatgcttgtcaagtaatgactcccaagcattcagaaaatcatcctcatactcaaaaccataaatgcaactttgcaactcgct 20249702  T
Q  308 agcaaaataattagatcgctgaaaggcatgattaacattctttagtgcattttgaaataaatgccacaagcataaacgatgatatgactcagggaaaaac 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249703 agcaaaataattagatcgctgaaaggcatgattaacattctttagtgcattttgaaataaatgccacaagcataaacgatgatatgactcagggaaaaac 20249802  T
Q  408 ctatgaaattgcctttgccattgcaggatcttgataggttaaaattgtcatcggctttttaccacacatagctttaagaaaagtcttgaacaaccactta 507  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249803 ctatgaaattgcctttgccattgcaggatcttgataggttaaaattgtcatcggctttttaccacacatagctttaagaaaagtcttgaacaaccactta 20249902  T
Q  508 aatgattcagctgtctcatcatataacaatgctgcaccgaataacacactttctcgatgatgattaaatccaacaaacggagcaaatggttgtaagttct 607  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20249903 aatgattcagctgtctcatcatataacaatgctgcaccgaataacacactttctcgatgatgattaaatccaacaaacggagcaaatggttgtaagttct 20250002  T
Q  608 tattagtgcgataagtggaatcaaaacacactacatctccaaaataagcataatccacgaccattttagcatcagcccaaaagatgtttgttattagatt 707  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20250003 tattagtgcgataagtggaatcaaaacacactacatctccaaaataagcataatccacgaccattttagcatcagcccaaaagatgtttgttattagatt 20250102  T
Q  708 atcaatgtctagttgaatttcataaaagaatgatgaatt 746  Q
    |||||||||||||||||||||||||||||||||||||||    
T  20250103 atcaatgtctagttgaatttcataaaagaatgatgaatt 20250141  T

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